Variant report

Variant	rs409583
Chromosome Location	chr17:63136141-63136142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63134560..63136303-chr17:63148966..63151804,2	MCF-7	breast:
2	chr17:63056499..63058774-chr17:63134667..63136263,2	MCF-7	breast:
3	chr17:63069108..63070683-chr17:63135799..63137763,2	MCF-7	breast:
4	chr17:63136097..63138454-chr17:63145517..63148046,2	MCF-7	breast:
5	chr17:63130431..63132814-chr17:63134933..63137280,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12325695	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12325697	1.00[EUR][1000 genomes]
rs12325701	1.00[EUR][1000 genomes]
rs12325705	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1530351	0.82[CHB][hapmap]
rs16960426	0.83[EUR][1000 genomes]
rs388527	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421516	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs426851	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs525978	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850328	0.83[EUR][1000 genomes]
rs72850331	0.83[EUR][1000 genomes]
rs72850349	0.83[EUR][1000 genomes]
rs72850352	0.83[EUR][1000 genomes]
rs72850373	1.00[EUR][1000 genomes]
rs72850379	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1009898	chr17:63135734-63146723	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63133000-63136200	Active TSS	Brain Anterior Caudate	brain
2	chr17:63134000-63136200	Enhancers	Fetal Thymus	thymus
3	chr17:63134000-63136400	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr17:63134000-63140600	Weak transcription	Right Atrium	heart
5	chr17:63134200-63136200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:63134400-63136200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr17:63134400-63140000	Weak transcription	Brain Substantia Nigra	brain
8	chr17:63134400-63143000	Weak transcription	Spleen	Spleen
9	chr17:63134400-63143200	Weak transcription	Esophagus	oesophagus
10	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
11	chr17:63134600-63140600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:63134800-63136400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:63135000-63136600	Enhancers	Lung	lung
14	chr17:63135000-63137200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr17:63135200-63136200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr17:63135400-63136200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr17:63135400-63136400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:63135600-63136600	Enhancers	Fetal Kidney	kidney
19	chr17:63135600-63139200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr17:63135800-63136200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr17:63135800-63146800	Weak transcription	Thymus	Thymus
22	chr17:63136000-63136400	Active TSS	GM12878-XiMat	blood
23	chr17:63136000-63138000	Enhancers	Dnd41	blood
24	chr17:63136000-63142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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