Variant report

Variant	rs4097990
Chromosome Location	chr9:11063519-11063520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:11056337..11059587-chr9:11061284..11064646,4	K562	blood:
2	chr9:11047082..11049411-chr9:11061377..11064321,2	K562	blood:
3	chr9:11056159..11057837-chr9:11062194..11064646,2	K562	blood:
4	chr9:11047509..11049109-chr9:11061184..11063575,2	MCF-7	breast:
5	chr9:11052013..11055648-chr9:11062078..11065783,4	K562	blood:
6	chr9:11051115..11054715-chr9:11062496..11065504,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10118524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556579	1.00[CHD][hapmap]
rs56111286	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58665115	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60523151	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60683772	0.98[EUR][1000 genomes]
rs60791296	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61180728	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7019650	0.96[ASN][1000 genomes]
rs7028450	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7047936	0.98[EUR][1000 genomes]
rs73404913	0.98[EUR][1000 genomes]
rs73404921	0.98[EUR][1000 genomes]
rs73404928	0.98[EUR][1000 genomes]
rs73640785	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73641501	0.96[EUR][1000 genomes]
rs73641502	0.96[EUR][1000 genomes]
rs73644709	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73644710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73644711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73644713	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7851350	0.92[EUR][1000 genomes]
rs7851426	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7853613	0.81[ASN][1000 genomes]
rs7856082	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7865064	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv529475	chr9:10648009-11435662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869473	chr9:10648009-11457399	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1023275	chr9:10681431-11191502	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv613404	chr9:10684803-11133965	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv613405	chr9:10692461-11139558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv613407	chr9:10753219-11280652	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1021035	chr9:10755356-11281192	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv917281	chr9:10786005-11277779	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1024662	chr9:10786074-11244071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv539999	chr9:10786074-11244071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv892333	chr9:10957549-11091254	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1033615	chr9:10972764-11530615	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv540000	chr9:10972764-11530615	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1015239	chr9:10992230-11246257	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1022325	chr9:11003058-11072447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1024126	chr9:11010337-11102080	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1019436	chr9:11033008-11247205	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11063200-11063600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:11063200-11063600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:11063200-11063600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:11063200-11063600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:11063200-11063600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:11063200-11063600	Flanking Active TSS	K562	blood
7	chr9:11063200-11063800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:11063200-11064000	Flanking Active TSS	Hela-S3	cervix

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