Variant report

Variant	rs4101465
Chromosome Location	chr2:179960550-179960551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1048026	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10497533	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10497534	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11892241	0.81[ASN][1000 genomes]
rs11900884	0.81[ASN][1000 genomes]
rs16866665	0.81[ASN][1000 genomes]
rs16866673	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17363183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17363246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17363323	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17363393	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17363449	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17363603	1.00[AFR][1000 genomes]
rs17453976	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17454024	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17454108	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17454150	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17454164	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17454192	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17454458	1.00[AFR][1000 genomes]
rs1838873	0.93[ASN][1000 genomes]
rs2008215	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2028906	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2305170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731739	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3816345	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4019422	0.90[ASN][1000 genomes]
rs4499457	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs58582728	1.00[AFR][1000 genomes]
rs60072979	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61179885	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6433759	0.81[ASN][1000 genomes]
rs6433766	0.81[ASN][1000 genomes]
rs6725309	0.81[ASN][1000 genomes]
rs879539	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875457	chr2:179775893-179966804	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875458	chr2:179780624-179966804	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv875465	chr2:179843612-179966804	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv508184	chr2:179896384-179965419	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1004693	chr2:179933683-180265288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1003301	chr2:179934190-179963263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179959800-179963000	Enhancers	Primary B cells from cord blood	blood
2	chr2:179960000-179962000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr2:179960000-179962800	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:179960200-179961400	Enhancers	Thymus	Thymus
5	chr2:179960200-179961800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:179960400-179960600	Enhancers	GM12878-XiMat	blood
7	chr2:179960400-179961600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr2:179960400-179961600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr2:179960400-179961600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:179960400-179961800	Enhancers	Primary T cells from cord blood	blood
11	chr2:179960400-179961800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:179960400-179962000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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