Variant report

Variant	rs4103781
Chromosome Location	chr1:154280622-154280623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154280303..154282360-chr1:154284259..154286471,2	K562	blood:
2	chr1:154279116..154280674-chr1:154289463..154291852,2	K562	blood:
3	chr1:154273544..154275651-chr1:154279583..154282150,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11265604	0.82[JPT][hapmap]
rs11578607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11581043	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1194584	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1194585	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1194586	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1194587	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1194592	0.89[CEU][hapmap]
rs1194607	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1194608	0.87[EUR][1000 genomes]
rs12033720	0.96[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1685606	0.87[EUR][1000 genomes]
rs1685634	0.88[EUR][1000 genomes]
rs1685635	0.88[EUR][1000 genomes]
rs1760794	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1760795	0.87[EUR][1000 genomes]
rs1889312	0.85[JPT][hapmap]
rs2483712	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2633433	0.88[EUR][1000 genomes]
rs28409746	0.87[EUR][1000 genomes]
rs34870927	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
4	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	esv3451054	chr1:154182013-154360141	Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154277200-154281000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:154279800-154281200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:154279800-154281200	Enhancers	K562	blood
4	chr1:154280000-154281000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:154280000-154281000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:154280000-154281000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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