Variant report

Variant	rs4113264
Chromosome Location	chr13:52181209-52181210
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52175306..52178787-chr13:52179968..52182908,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10676	1.00[CHD][hapmap]
rs11148228	1.00[CHD][hapmap]
rs11616606	1.00[CHD][hapmap]
rs9596560	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
2	chr13:52163200-52182600	Weak transcription	Ovary	ovary
3	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
4	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:52169800-52187000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:52169800-52188600	Weak transcription	Esophagus	oesophagus
7	chr13:52169800-52188600	Weak transcription	Gastric	stomach
8	chr13:52173600-52190400	Weak transcription	Fetal Heart	heart
9	chr13:52174200-52183000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:52174200-52188200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr13:52174400-52188400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr13:52174600-52183000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr13:52174800-52181400	Weak transcription	GM12878-XiMat	blood
14	chr13:52175000-52181400	Weak transcription	Aorta	Aorta
15	chr13:52175000-52183000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:52175000-52183000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr13:52175000-52187200	Weak transcription	Spleen	Spleen
18	chr13:52175000-52188600	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:52176000-52188600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:52176200-52181400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:52176200-52184000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:52176600-52183000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr13:52176600-52188400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:52176600-52188400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr13:52176800-52181800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:52177000-52181400	Weak transcription	HSMM	muscle
27	chr13:52177000-52182600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr13:52177000-52182600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:52177000-52188400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr13:52177200-52181400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr13:52177600-52182400	Weak transcription	Right Ventricle	heart
32	chr13:52177600-52182600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr13:52177600-52183000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr13:52177800-52181400	Enhancers	HepG2	liver
35	chr13:52178000-52181400	Weak transcription	Primary B cells from cord blood	blood
36	chr13:52178000-52182000	Weak transcription	Primary T cells from cord blood	blood
37	chr13:52178200-52188600	Weak transcription	Left Ventricle	heart
38	chr13:52178200-52188600	Weak transcription	Lung	lung
39	chr13:52178800-52181600	Enhancers	NHDF-Ad	bronchial
40	chr13:52179400-52181400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:52179400-52183000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr13:52179400-52187200	Weak transcription	Pancreas	Pancrea
43	chr13:52179600-52181800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr13:52179600-52187200	Weak transcription	Right Atrium	heart
45	chr13:52179800-52181400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:52179800-52181600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr13:52179800-52181600	Enhancers	HMEC	breast
48	chr13:52180000-52181800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr13:52180000-52187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr13:52180200-52181400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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