The 2.0 version of rSNPBase

Variant report

Variant rs412384
Chromosome Location chr6:25507798-25507799
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:25449400-25515800 Weak transcription Lung lung
2 chr6:25456400-25515800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:25456400-25537000 Weak transcription Esophagus oesophagus
4 chr6:25463200-25532200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:25464200-25518400 Weak transcription Primary hematopoietic stem cells blood
6 chr6:25466400-25516000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr6:25466800-25515800 Weak transcription Fetal Stomach stomach
8 chr6:25471600-25597200 Weak transcription Gastric stomach
9 chr6:25473600-25516000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr6:25480000-25511400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr6:25480800-25523600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr6:25483000-25532200 Weak transcription Rectal Smooth Muscle rectum
13 chr6:25484800-25515600 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr6:25490400-25515800 Weak transcription Thymus Thymus
15 chr6:25490400-25521800 Weak transcription GM12878-XiMat blood
16 chr6:25490400-25543000 Weak transcription Hela-S3 cervix
17 chr6:25490600-25524600 Weak transcription A549 lung
18 chr6:25490800-25511600 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr6:25490800-25515800 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr6:25490800-25515800 Weak transcription Ovary ovary
21 chr6:25490800-25516400 Weak transcription Primary T cells fromperipheralblood blood
22 chr6:25490800-25521400 Weak transcription Small Intestine intestine
23 chr6:25491600-25521000 Weak transcription HSMMtube muscle
24 chr6:25494000-25515400 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr6:25494000-25515600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr6:25494000-25551400 Weak transcription Left Ventricle heart
27 chr6:25494600-25515600 Weak transcription Fetal Thymus thymus
28 chr6:25495000-25515800 Weak transcription Fetal Lung lung
29 chr6:25495000-25516400 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr6:25498000-25515800 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr6:25500400-25511000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr6:25500400-25515800 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr6:25500400-25515800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr6:25500400-25516000 Weak transcription H9 Cell Line embryonic stem cell
35 chr6:25500600-25515800 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr6:25500600-25516000 Weak transcription HMEC breast
37 chr6:25500600-25516400 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr6:25500600-25520800 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr6:25500600-25523800 Weak transcription Placenta Placenta
40 chr6:25500800-25509000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr6:25500800-25511200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr6:25500800-25516000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr6:25501800-25515200 Weak transcription Duodenum Mucosa Duodenum
44 chr6:25502000-25515800 Weak transcription Fetal Intestine Large intestine
45 chr6:25504000-25518000 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr6:25504200-25512800 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr6:25505000-25515600 Weak transcription HUES64 Cell Line embryonic stem cell
48 chr6:25505600-25515800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr6:25506000-25507800 Enhancers Brain Germinal Matrix brain
50 chr6:25506000-25510400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015