Variant report

Variant	rs41263724
Chromosome Location	chr1:172007376-172007377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10910924	0.84[EUR][1000 genomes]
rs11497367	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	nsv3532	chr1:171997451-172042351	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171994000-172020400	Weak transcription	Left Ventricle	heart
2	chr1:171994200-172009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172000000-172012800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:172000400-172009800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:172000600-172013600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:172000800-172011400	Weak transcription	Right Ventricle	heart
7	chr1:172000800-172013800	Weak transcription	Fetal Brain Female	brain
8	chr1:172001400-172019000	Weak transcription	Fetal Brain Male	brain
9	chr1:172002200-172011600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:172002800-172013200	Weak transcription	Primary T cells from cord blood	blood
11	chr1:172003000-172012400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:172003200-172008200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:172003200-172009800	Weak transcription	Brain Anterior Caudate	brain
14	chr1:172004000-172014000	Weak transcription	Lung	lung
15	chr1:172004200-172008800	Weak transcription	NHEK	skin
16	chr1:172005600-172015200	Weak transcription	HSMMtube	muscle
17	chr1:172006000-172013800	Weak transcription	Brain Germinal Matrix	brain
18	chr1:172006400-172010200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:172006400-172025600	Weak transcription	Adipose Nuclei	Adipose
20	chr1:172006800-172007600	Strong transcription	Brain Hippocampus Middle	brain
21	chr1:172006800-172007600	Strong transcription	Brain Substantia Nigra	brain
22	chr1:172006800-172008400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:172006800-172010800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:172007000-172009800	Weak transcription	Aorta	Aorta
25	chr1:172007000-172010600	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr1:172007200-172007600	Weak transcription	Psoas Muscle	Psoas
27	chr1:172007200-172009800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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