Variant report

Variant	rs41264705
Chromosome Location	chr4:7780582-7780583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11721583	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11721609	0.91[EUR][1000 genomes]
rs11724632	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11728778	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11729332	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11729602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730169	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11731942	0.89[EUR][1000 genomes]
rs11733311	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11734524	0.90[EUR][1000 genomes]
rs11734860	0.89[EUR][1000 genomes]
rs11737447	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13113113	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13117918	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13125295	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128495	0.84[ASN][1000 genomes]
rs13132939	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17382379	0.89[EUR][1000 genomes]
rs17382393	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17466895	0.89[EUR][1000 genomes]
rs34250310	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34276892	0.82[EUR][1000 genomes]
rs34352176	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34949259	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35041036	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35161247	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35509185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35515779	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35592594	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35617438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35672467	0.83[AFR][1000 genomes]
rs35870249	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35889107	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3934645	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4443284	0.89[EUR][1000 genomes]
rs4594724	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55698135	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55740648	0.83[EUR][1000 genomes]
rs56270003	0.93[EUR][1000 genomes]
rs56352084	0.87[EUR][1000 genomes]
rs58457272	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61036795	0.91[EUR][1000 genomes]
rs62289276	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62289280	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62291980	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62291982	0.91[AMR][1000 genomes]
rs62291983	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62291984	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs885260	0.89[EUR][1000 genomes]
rs885261	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7758000-7780800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:7758200-7783200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:7758400-7795400	Weak transcription	Hela-S3	cervix
4	chr4:7758600-7780600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:7759400-7790400	Weak transcription	Psoas Muscle	Psoas
6	chr4:7760000-7783000	Strong transcription	HSMMtube	muscle
7	chr4:7760000-7783200	Strong transcription	HSMM	muscle
8	chr4:7761200-7781000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:7761400-7784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:7762000-7788000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:7762000-7805800	Weak transcription	Stomach Mucosa	stomach
12	chr4:7766000-7780600	Strong transcription	Osteobl	bone
13	chr4:7766800-7781200	Strong transcription	HUVEC	blood vessel
14	chr4:7767200-7780800	Strong transcription	NH-A	brain
15	chr4:7767600-7781000	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr4:7770800-7828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:7771600-7780800	Strong transcription	Pancreas	Pancrea
18	chr4:7772000-7783000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:7773600-7782800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:7773600-7783000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:7773600-7783600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:7773800-7783400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:7774000-7782800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr4:7774000-7783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:7774200-7781600	Strong transcription	A549	lung
26	chr4:7774400-7780600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:7774400-7781000	Weak transcription	Fetal Heart	heart
28	chr4:7774600-7783000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:7774600-7783400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:7775000-7780600	Strong transcription	Adipose Nuclei	Adipose
31	chr4:7775200-7782400	Strong transcription	Placenta	Placenta
32	chr4:7775400-7780800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:7775400-7783400	Weak transcription	Small Intestine	intestine
34	chr4:7775800-7780800	Strong transcription	NHDF-Ad	bronchial
35	chr4:7776000-7780800	Strong transcription	Fetal Intestine Large	intestine
36	chr4:7776000-7784400	Strong transcription	Fetal Intestine Small	intestine
37	chr4:7776200-7781000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:7776400-7780800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:7776400-7787200	Weak transcription	Fetal Brain Male	brain
40	chr4:7776400-7790000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:7776400-7799000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:7776400-7800000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr4:7776400-7806800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr4:7776600-7783000	Weak transcription	Right Ventricle	heart
45	chr4:7776600-7783200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr4:7776600-7785400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr4:7777000-7783600	Strong transcription	HMEC	breast
48	chr4:7777000-7785800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:7777200-7783400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:7777400-7784200	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links