Variant report

Variant	rs41265579
Chromosome Location	chr2:189844116-189844117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189843846..189845833-chr2:189848371..189850816,2	K562	blood:
2	chr2:189460620..189463074-chr2:189843714..189846986,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459992	chr2:189796272-189855943	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv584057	chr2:189796272-189855943	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875609	chr2:189796272-189862097	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv875610	chr2:189796272-189904674	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv584058	chr2:189799499-189855943	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	esv1791841	chr2:189811074-189864582	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv584059	chr2:189841052-189868381	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv875612	chr2:189841052-189878769	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	esv3418829	chr2:189843907-189847705	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv584060	chr2:189844000-189876138	Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv584061	chr2:189844000-189878769	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189837800-189844800	Active TSS	Stomach Smooth Muscle	stomach
2	chr2:189838000-189844600	Active TSS	Right Atrium	heart
3	chr2:189838000-189844800	Active TSS	Adipose Nuclei	Adipose
4	chr2:189838000-189844800	Active TSS	NHLF	lung
5	chr2:189838200-189844800	Active TSS	Fetal Stomach	stomach
6	chr2:189838200-189846000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:189838200-189849400	Active TSS	Fetal Muscle Leg	muscle
8	chr2:189838400-189844400	Active TSS	Fetal Intestine Large	intestine
9	chr2:189838400-189844600	Active TSS	Fetal Kidney	kidney
10	chr2:189838400-189844600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr2:189838400-189844800	Active TSS	Fetal Muscle Trunk	muscle
12	chr2:189838400-189845000	Active TSS	HSMMtube	muscle
13	chr2:189838600-189844600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:189838600-189844600	Active TSS	Rectal Smooth Muscle	rectum
15	chr2:189838600-189844800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:189838600-189844800	Active TSS	Colon Smooth Muscle	Colon
17	chr2:189838600-189844800	Active TSS	Ovary	ovary
18	chr2:189839400-189858000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:189840600-189844400	Active TSS	Psoas Muscle	Psoas
20	chr2:189841400-189864000	Weak transcription	Left Ventricle	heart
21	chr2:189841800-189844800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr2:189841800-189875200	Weak transcription	Colonic Mucosa	Colon
23	chr2:189842200-189844400	Enhancers	Fetal Heart	heart
24	chr2:189842200-189844600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:189842400-189866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:189842800-189844800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:189843000-189849400	Weak transcription	Placenta	Placenta
28	chr2:189843200-189844600	Flanking Active TSS	A549	lung
29	chr2:189843200-189844800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:189843200-189844800	Active TSS	Aorta	Aorta
31	chr2:189843200-189845000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:189843400-189844200	Weak transcription	Fetal Intestine Small	intestine
33	chr2:189843400-189861800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:189843600-189844200	Active TSS	GM12878-XiMat	blood
35	chr2:189843600-189844400	Flanking Active TSS	NH-A	brain
36	chr2:189843600-189844800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr2:189843600-189845000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:189843600-189847200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:189843600-189874200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr2:189843800-189844200	Active TSS	Fetal Lung	lung
41	chr2:189843800-189844400	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
42	chr2:189844000-189844200	Flanking Active TSS	NHDF-Ad	bronchial
43	chr2:189844000-189844400	Flanking Active TSS	HSMM	muscle
44	chr2:189844000-189844600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:189844000-189844800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:189844000-189844800	Enhancers	HUVEC	blood vessel
47	chr2:189844000-189844800	Flanking Active TSS	Osteobl	bone

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