Variant report

Variant	rs41266811
Chromosome Location	chr6:26216656-26216657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:418)
CpG islands
(count:61)
Chromatin interactive
region (count:74)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:418 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:26216523-26217753	GM12878	blood:	n/a	n/a
2	ZBTB33	chr6:26216540-26217641	K562	blood:	n/a	chr6:26217439-26217454
3	POLR2A	chr6:26215735-26217935	Raji	blood:	n/a	n/a
4	SIN3AK20	chr6:26215578-26217797	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr6:26214574-26218621	GM12878	blood:	n/a	n/a
6	SIN3AK20	chr6:26216492-26216977	K562	blood:	n/a	n/a
7	ELK1	chr6:26216507-26217726	Hela-S3	cervix:	n/a	n/a
8	MXI1	chr6:26214680-26218422	K562	blood:	n/a	n/a
9	EP300	chr6:26216393-26217698	HepG2	liver:	n/a	n/a
10	POLR2A	chr6:26216445-26216937	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr6:26215213-26218610	GM12878	blood:	n/a	n/a
12	JUN	chr6:26216656-26217618	K562	blood:	n/a	chr6:26217036-26217045
13	NFIC	chr6:26215794-26217960	HepG2	liver:	n/a	n/a
14	NFYA	chr6:26216612-26217416	Hela-S3	cervix:	n/a	chr6:26217075-26217089 chr6:26216984-26216999 chr6:26216986-26216999 chr6:26216985-26216999 chr6:26217074-26217086 chr6:26217075-26217088 chr6:26217040-26217058
15	MBD4	chr6:26215749-26218130	HepG2	liver:	n/a	n/a
16	BACH1	chr6:26215565-26218191	K562	blood:	n/a	n/a
17	MYC	chr6:26216581-26216883	HepG2	liver:	n/a	n/a
18	GATA3	chr6:26215520-26218108	SK-N-SH	brain:	n/a	chr6:26215798-26215807 chr6:26215794-26215810 chr6:26217036-26217046
19	IRF1	chr6:26216586-26217510	K562	blood:	n/a	chr6:26217077-26217086
20	KAP1	chr6:26215852-26218055	K562	blood:	n/a	n/a
21	SRF	chr6:26216622-26217071	GM12878	blood:	n/a	chr6:26216935-26216953
22	CBX3	chr6:26216520-26217634	K562	blood:	n/a	n/a
23	PML	chr6:26215528-26218235	GM12878	blood:	n/a	n/a
24	ELF1	chr6:26216447-26216868	GM12878	blood:	n/a	n/a
25	TAF1	chr6:26216487-26217723	Hela-S3	cervix:	n/a	n/a
26	NFYA	chr6:26216651-26217525	K562	blood:	n/a	chr6:26217075-26217089 chr6:26216984-26216999 chr6:26216986-26216999 chr6:26216985-26216999 chr6:26217074-26217086 chr6:26217075-26217088 chr6:26217040-26217058
27	TAF1	chr6:26216458-26217764	H1-hESC	embryonic stem cell:	n/a	n/a
28	ELK1	chr6:26215673-26218149	K562	blood:	n/a	n/a
29	POLR2A	chr6:26215807-26217978	HL-60	blood:	n/a	n/a
30	CREB1	chr6:26214528-26218298	K562	blood:	n/a	n/a
31	POLR2A	chr6:26215369-26218389	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr6:26215050-26218139	ProgFib	skin:	n/a	n/a
33	POLR2A	chr6:26213900-26218742	K562	blood:	n/a	n/a
34	SIN3AK20	chr6:26214907-26218436	MCF-7	breast:	n/a	n/a
35	REST	chr6:26215385-26218336	H1-neurons	neurons:	n/a	n/a
36	FOXA2	chr6:26216382-26217566	HepG2	liver:	n/a	n/a
37	ETS1	chr6:26214964-26216998	K562	blood:	n/a	n/a
38	BCLAF1	chr6:26213034-26218725	K562	blood:	n/a	chr6:26213177-26213185
39	POLR2A	chr6:26215583-26218221	GM18951	blood:	n/a	n/a
40	YY1	chr6:26216650-26216994	SK-N-SH_RA	brain:	n/a	n/a
41	HEY1	chr6:26215453-26218257	HepG2	liver:	n/a	n/a
42	CREB1	chr6:26216529-26217806	H1-hESC	embryonic stem cell:	n/a	n/a
43	STAT5A	chr6:26216030-26217854	K562	blood:	n/a	n/a
44	POLR2A	chr6:26215014-26218326	Hela-S3	cervix:	n/a	n/a
45	SIN3AK20	chr6:26216448-26216966	SK-N-SH	brain:	n/a	n/a
46	REST	chr6:26216604-26217775	H1-neurons	neurons:	n/a	n/a
47	PML	chr6:26215622-26217759	MCF-7	breast:	n/a	n/a
48	POLR2A	chr6:26215399-26218324	GM12891	blood:	n/a	n/a
49	POLR2A	chr6:26215743-26217728	Gliobla	brain:	n/a	n/a
50	SRF	chr6:26216398-26217540	MCF-7	breast:	n/a	chr6:26216935-26216953

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26216654-26216704	GM19239	blood:	n/a
2	chr6:26216654-26216704	HCF	heart:	n/a
3	chr6:26216654-26216704	NHBE	bronchial:	n/a
4	chr6:26216654-26216704	AoSMC	blood vessel:	n/a
5	chr6:26216654-26216704	AG09319	gingival:	n/a
6	chr6:26216654-26216704	IMR90	lung:	fetal
7	chr6:26216654-26216704	H1-hESC	embryonic stem cell:	embryo
8	chr6:26216654-26216704	AG04449	skin:	fetal
9	chr6:26216654-26216704	HEEpiC	esophagus:	n/a
10	chr6:26216654-26216704	T-47D	breast:	n/a
11	chr6:26216654-26216704	HL-60	blood:	n/a
12	chr6:26216654-26216704	CMK	blood:	n/a
13	chr6:26216654-26216704	NHDF-neo	bronchial:	n/a
14	chr6:26216654-26216704	U87	brain:	n/a
15	chr6:26216654-26216704	SKMC	muscle:	n/a
16	chr6:26216654-26216704	BJ	skin:	n/a
17	chr6:26216654-26216704	PANC-1	pancreas:	n/a
18	chr6:26216654-26216704	A549	lung:	n/a
19	chr6:26216654-26216704	SK-N-SH	brain:	n/a
20	chr6:26216654-26216704	HEK293	kidney:	embryo
21	chr6:26216654-26216704	HCPEpiC	choroid plexus:	n/a
22	chr6:26216654-26216704	SK-N-SH_RA	brain:	n/a
23	chr6:26216654-26216704	GM12878	blood:	n/a
24	chr6:26216654-26216704	HPAEpiC	pulmonary alveolar:	n/a
25	chr6:26216654-26216704	SAEC	small airway:	n/a
26	chr6:26216654-26216704	ProgFib	skin:	n/a
27	chr6:26216654-26216704	HRCEpiC	kidney:	n/a
28	chr6:26216654-26216704	HUVEC	blood vessel:	n/a
29	chr6:26216654-26216704	PrEC	prostate:	n/a
30	chr6:26216654-26216704	HCT-116	colon:	n/a
31	chr6:26216654-26216704	AG10803	skin:	n/a
32	chr6:26216654-26216704	HRE	kidney:	n/a
33	chr6:26216654-26216704	AG09309	skin:	n/a
34	chr6:26216654-26216704	GM12891	blood:	n/a
35	chr6:26216654-26216704	MCF-7	breast:	n/a
36	chr6:26216654-26216704	HIPEpiC	eye:	n/a
37	chr6:26216654-26216704	K562	blood:	n/a
38	chr6:26216654-26216704	MCF10A-Er-Src	breast:	n/a
39	chr6:26216654-26216704	LNCaP	prostate:	n/a
40	chr6:26216654-26216704	Hela-S3	cervix:	n/a
41	chr6:26216654-26216704	Hepatocyte	liver:	n/a
42	chr6:26216654-26216704	BE2_C	brain:	n/a
43	chr6:26216654-26216704	NB4	blood:	n/a
44	chr6:26216654-26216704	AG04450	lung:	fetal
45	chr6:26216654-26216704	NH-A	brain:	n/a
46	chr6:26216654-26216704	NT2-D1	testis:	n/a
47	chr6:26216654-26216704	PFSK-1	brain:	n/a
48	chr6:26216654-26216704	HMEC	breast:	n/a
49	chr6:26216654-26216704	GM12892	blood:	n/a
50	chr6:26216654-26216704	HNPCEpiC	eye:	n/a

(count:74 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr20:49348026..49349597-chr6:26215508..26217715,2	MCF-7	breast:
2	chr1:185286851..185288619-chr6:26215919..26218798,2	MCF-7	breast:
3	chr6:26215814..26218576-chr6:27831262..27835058,4	K562	blood:
4	chr6:26043570..26047536-chr6:26215421..26218540,6	MCF-7	breast:
5	chr14:91526486..91527141-chr6:26216525..26217130,2	Hela-S3	cervix:
6	chr17:57914044..57915959-chr6:26214314..26217277,2	MCF-7	breast:
7	chr6:26213328..26219374-chr6:27098401..27104203,12	MCF-7	breast:
8	chr16:28936795..28937384-chr6:26216177..26216989,2	Hela-S3	cervix:
9	chr6:26216492..26217036-chrX:12992847..12993711,2	Hela-S3	cervix:
10	chr6:26214554..26217001-chr6:27106278..27109179,2	MCF-7	breast:
11	chr17:56735711..56736858-chr6:26216608..26217414,4	Hela-S3	cervix:
12	chr6:26214207..26218801-chr6:27106442..27111603,7	MCF-7	breast:
13	chr16:3060917..3063376-chr6:26214256..26216912,2	MCF-7	breast:
14	chr6:26214930..26218738-chr6:27859344..27862505,4	MCF-7	breast:
15	chr3:139107928..139108761-chr6:26216410..26217328,2	Hela-S3	cervix:
16	chr6:26215032..26220721-chr6:27098305..27106549,21	K562	blood:
17	chr11:65194325..65196313-chr6:26214242..26216837,2	K562	blood:
18	chr6:26216471..26218036-chr7:5566391..5569236,2	K562	blood:
19	chr6:26215488..26220486-chr6:27788576..27794997,7	K562	blood:
20	chr5:54602447..54604232-chr6:26215891..26218402,2	MCF-7	breast:
21	chr6:26216402..26217347-chr9:6757097..6757962,2	Hela-S3	cervix:
22	chr15:59396980..59397791-chr6:26216645..26217175,2	Hela-S3	cervix:
23	chr19:2268615..2270714-chr6:26215823..26217976,2	MCF-7	breast:
24	chr20:45983626..45990227-chr6:26215663..26218727,7	MCF-7	breast:
25	chr3:127842047..127842844-chr6:26216517..26217439,2	Hela-S3	cervix:
26	chr6:26212513..26218940-chr6:27112008..27117016,14	K562	blood:
27	chr6:26216366..26217635-chr6:26250388..26251193,3	Hela-S3	cervix:
28	chr20:42086396..42086953-chr6:26216015..26216952,2	Hela-S3	cervix:
29	chr6:26216415..26217414-chr7:129844683..129845475,2	Hela-S3	cervix:
30	chr17:41116019..41116647-chr6:26216512..26217287,2	Hela-S3	cervix:
31	chr13:103450797..103451428-chr6:26216505..26217328,2	NB4	blood:
32	chr19:10443698..10444510-chr6:26216630..26217280,2	Hela-S3	cervix:
33	chr6:26123055..26124364-chr6:26216194..26217226,3	Hela-S3	cervix:
34	chr20:34252111..34252873-chr6:26216460..26217196,2	NB4	blood:
35	chr6:26215412..26219085-chr6:26518224..26524021,6	K562	blood:
36	chr11:9336246..9336770-chr6:26216163..26217090,2	Hela-S3	cervix:
37	chr17:34900825..34901654-chr6:26216319..26216926,2	Hela-S3	cervix:
38	chr6:26215418..26221672-chr6:27112268..27118117,18	K562	blood:
39	chr19:30432252..30434729-chr6:26214115..26216902,2	MCF-7	breast:
40	chr1:149857452..149859186-chr6:26215431..26217999,2	MCF-7	breast:
41	chr6:26210558..26220469-chr6:27093552..27103796,28	K562	blood:
42	chr6:26215236..26220335-chr6:27112505..27117796,8	MCF-7	breast:
43	chr16:88870201..88873123-chr6:26216072..26218650,2	MCF-7	breast:
44	chr1:205718859..205719613-chr6:26216580..26217092,2	Hela-S3	cervix:
45	chr11:2949908..2952433-chr6:26215728..26218392,2	K562	blood:
46	chr6:26215362..26217924-chr6:27790762..27793250,4	MCF-7	breast:
47	chr11:65625083..65627509-chr6:26216326..26218082,2	MCF-7	breast:
48	chr1:109968590..109969511-chr6:26216110..26217035,2	Hela-S3	cervix:
49	chr6:26157950..26159489-chr6:26216516..26217479,4	Hela-S3	cervix:
50	chr6:26216567..26217621-chr8:9007935..9009111,3	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H2AE	TF binding region
HIST1H2AE	CpG island
ENSG00000198339	Chromatin interaction
ENSG00000143106	Chromatin interaction
ENSG00000167476	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000207501	Chromatin interaction
ENSG00000133943	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000240541	Chromatin interaction
ENSG00000067248	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000146842	Chromatin interaction
ENSG00000107077	Chromatin interaction
ENSG00000100784	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000103994	Chromatin interaction
ENSG00000177548	Chromatin interaction
ENSG00000263900	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000166471	Chromatin interaction
ENSG00000173281	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000244462	Chromatin interaction
ENSG00000169908	Chromatin interaction
ENSG00000161847	Chromatin interaction
ENSG00000176473	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000185950	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000157456	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000184432	Chromatin interaction
ENSG00000217646	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000248932	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000105643	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000134901	Chromatin interaction
ENSG00000181649	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000124193	Chromatin interaction
ENSG00000005955	Chromatin interaction
ENSG00000214078	Chromatin interaction
ENSG00000089009	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000213937	Chromatin interaction
ENSG00000102172	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000134897	Chromatin interaction
ENSG00000160888	Chromatin interaction
ENSG00000105176	Chromatin interaction
ENSG00000167513	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000140259	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000140105	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000039123	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000092531	Chromatin interaction
ENSG00000205542	Chromatin interaction
ENSG00000273004	Chromatin interaction
ENSG00000175792	Chromatin interaction
ENSG00000266967	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000069275	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000104904	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11751062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751286	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11751812	0.90[EUR][1000 genomes]
rs11753084	0.86[EUR][1000 genomes]
rs11753717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753837	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11754140	0.90[EUR][1000 genomes]
rs11754368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757549	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757724	0.88[EUR][1000 genomes]
rs11759758	0.87[EUR][1000 genomes]
rs11760140	0.85[EUR][1000 genomes]
rs16891375	0.87[EUR][1000 genomes]
rs16891407	0.90[EUR][1000 genomes]
rs16891464	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891484	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1981019	0.87[EUR][1000 genomes]
rs2179516	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734534	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56119218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775052	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
13	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
14	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
15	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
16	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
17	nsv883490	chr6:26172219-26231608	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	316 gene(s)	inside rSNPs	diseases
18	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41266811	HIST1H3E	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26214000-26219000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:26214200-26218600	Active TSS	Fetal Kidney	kidney
3	chr6:26214600-26219200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:26214800-26218600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:26214800-26219200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:26215000-26216800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:26215000-26216800	Flanking Active TSS	Fetal Thymus	thymus
8	chr6:26215000-26217600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
9	chr6:26215000-26218000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr6:26215000-26218800	Active TSS	Fetal Brain Female	brain
11	chr6:26215000-26219000	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:26215000-26219200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:26215000-26219400	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:26215200-26216800	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr6:26215200-26216800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:26215200-26216800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr6:26215200-26216800	Flanking Active TSS	Fetal Muscle Leg	muscle
18	chr6:26215200-26217000	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr6:26215200-26217800	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr6:26215200-26218800	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr6:26215200-26218800	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:26215200-26218800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:26215200-26219000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:26215200-26219400	Active TSS	H9 Cell Line	embryonic stem cell
25	chr6:26215400-26216800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr6:26215400-26216800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr6:26215400-26216800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:26215400-26216800	Flanking Active TSS	Liver	Liver
29	chr6:26215400-26217800	Active TSS	Esophagus	oesophagus
30	chr6:26215400-26218000	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:26215400-26218400	Active TSS	Fetal Intestine Small	intestine
32	chr6:26215400-26218600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:26215400-26218800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:26215400-26218800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:26215600-26216800	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr6:26215600-26216800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr6:26215600-26216800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:26215600-26216800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr6:26215600-26216800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr6:26215600-26216800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:26215600-26216800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr6:26215600-26216800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:26215600-26216800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr6:26215600-26216800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:26215600-26216800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:26215600-26216800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:26215600-26216800	Active TSS	Brain Angular Gyrus	brain
48	chr6:26215600-26216800	Enhancers	Spleen	Spleen
49	chr6:26215600-26216800	Flanking Active TSS	Dnd41	blood
50	chr6:26215600-26216800	Flanking Active TSS	HUVEC	blood vessel

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