Variant report

Variant	rs41267118
Chromosome Location	chr6:31939345-31939346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:145)
CpG islands
(count:122)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:145 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31938474-31940650	GM19193	blood:	n/a	n/a
2	POLR2A	chr6:31938752-31941149	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr6:31938882-31941175	GM12878	blood:	n/a	n/a
4	NFIC	chr6:31939163-31940398	HepG2	liver:	n/a	n/a
5	ATF2	chr6:31939321-31940541	GM12878	blood:	n/a	n/a
6	POLR2A	chr6:31938662-31941771	IMR90	lung:	n/a	n/a
7	POLR2A	chr6:31938929-31941244	K562	blood:	n/a	n/a
8	POLR2A	chr6:31937284-31941234	K562	blood:	n/a	n/a
9	CREB1	chr6:31939193-31941147	K562	blood:	n/a	n/a
10	CREB1	chr6:31939237-31940968	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:31939323-31940617	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:31938559-31940522	HUVEC	blood vessel:	n/a	n/a
13	POLR2A	chr6:31937431-31941001	GM12892	blood:	n/a	n/a
14	POLR2A	chr6:31937473-31940648	PANC-1	pancreas:	n/a	n/a
15	MAX	chr6:31939337-31941016	HepG2	liver:	n/a	chr6:31940293-31940302
16	NFATC1	chr6:31938506-31940406	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:31937360-31941122	HepG2	liver:	n/a	n/a
18	MAX	chr6:31939263-31940696	A549	lung:	n/a	chr6:31940293-31940302
19	POLR2A	chr6:31935907-31941545	HepG2	liver:	n/a	n/a
20	POLR2A	chr6:31936260-31941395	K562	blood:	n/a	n/a
21	NR2F2	chr6:31939226-31941513	K562	blood:	n/a	n/a
22	MXI1	chr6:31939220-31941348	IMR90	lung:	n/a	chr6:31940289-31940304
23	POLR2A	chr6:31938465-31940549	HCT-116	colon:	n/a	n/a
24	POLR2A	chr6:31937353-31941181	K562	blood:	n/a	n/a
25	POLR2A	chr6:31938389-31940570	HCT-116	colon:	n/a	n/a
26	POLR2A	chr6:31938002-31941081	MCF10A-Er-Src	breast:	n/a	n/a
27	CREB1	chr6:31939197-31940731	GM12878	blood:	n/a	n/a
28	JUND	chr6:31939314-31941062	GM12878	blood:	n/a	n/a
29	ATF2	chr6:31939208-31940603	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr6:31935432-31941169	K562	blood:	n/a	n/a
31	MBD4	chr6:31939135-31940686	HepG2	liver:	n/a	n/a
32	POLR2A	chr6:31937171-31940595	HepG2	liver:	n/a	n/a
33	POLR2A	chr6:31938789-31940287	HCT-116	colon:	n/a	n/a
34	MAX	chr6:31939027-31941248	K562	blood:	n/a	chr6:31940293-31940302
35	HCFC1	chr6:31938727-31941371	Hela-S3	cervix:	n/a	n/a
36	TCF12	chr6:31938924-31940436	A549	lung:	n/a	n/a
37	POLR2A	chr6:31939047-31940719	MCF-7	breast:	n/a	n/a
38	POLR2A	chr6:31938844-31940553	U87	brain:	n/a	n/a
39	POLR2A	chr6:31939147-31940643	HUVEC	blood vessel:	n/a	n/a
40	POLR2A	chr6:31938585-31940721	MCF-7	breast:	n/a	n/a
41	POLR2A	chr6:31937740-31940568	HL-60	blood:	n/a	n/a
42	POLR2A	chr6:31939103-31940577	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr6:31936682-31940672	PFSK-1	brain:	n/a	n/a
44	MAZ	chr6:31938781-31941398	IMR90	lung:	n/a	chr6:31940293-31940302
45	PML	chr6:31939236-31941431	K562	blood:	n/a	n/a
46	POLR2A	chr6:31939035-31940577	H1-hESC	embryonic stem cell:	n/a	n/a
47	MXI1	chr6:31939309-31940566	Hela-S3	cervix:	n/a	chr6:31940289-31940304
48	POLR2A	chr6:31936493-31941269	GM12892	blood:	n/a	n/a
49	POLR2A	chr6:31938529-31940676	HUVEC	blood vessel:	n/a	n/a
50	POLR2A	chr6:31937608-31940714	HL-60	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31939319-31939369	SKMC	muscle:	n/a
2	chr6:31939322-31939372	AoSMC	blood vessel:	n/a
3	chr6:31939322-31939372	Hela-S3	cervix:	n/a
4	chr6:31939319-31939369	AG09319	gingival:	n/a
5	chr6:31939322-31939372	HCPEpiC	choroid plexus:	n/a
6	chr6:31939319-31939369	AG09309	skin:	n/a
7	chr6:31939319-31939369	K562	blood:	n/a
8	chr6:31939322-31939372	HEK293	kidney:	embryo
9	chr6:31939319-31939369	NHDF-neo	bronchial:	n/a
10	chr6:31939319-31939369	HUVEC	blood vessel:	n/a
11	chr6:31939319-31939369	HRCEpiC	kidney:	n/a
12	chr6:31939322-31939372	PANC-1	pancreas:	n/a
13	chr6:31939322-31939372	NT2-D1	testis:	n/a
14	chr6:31939319-31939369	SK-N-MC	brain:	n/a
15	chr6:31939319-31939369	HEEpiC	esophagus:	n/a
16	chr6:31939319-31939369	BJ	skin:	n/a
17	chr6:31939322-31939372	ECC-1	luminal epithelium:	n/a
18	chr6:31939319-31939369	HRPEpiC	eye:	n/a
19	chr6:31939319-31939369	AoSMC	blood vessel:	n/a
20	chr6:31939322-31939372	NHDF-neo	bronchial:	n/a
21	chr6:31939322-31939372	MCF-7	breast:	n/a
22	chr6:31939322-31939372	HEEpiC	esophagus:	n/a
23	chr6:31939322-31939372	HRCEpiC	kidney:	n/a
24	chr6:31939319-31939369	GM12892	blood:	n/a
25	chr6:31939319-31939369	HCT-116	colon:	n/a
26	chr6:31939319-31939369	HCM	heart:	n/a
27	chr6:31939322-31939372	BE2_C	brain:	n/a
28	chr6:31939319-31939369	H1-hESC	embryonic stem cell:	embryo
29	chr6:31939319-31939369	HMEC	breast:	n/a
30	chr6:31939322-31939372	HL-60	blood:	n/a
31	chr6:31939322-31939372	SK-N-SH	brain:	n/a
32	chr6:31939322-31939372	AG10803	skin:	n/a
33	chr6:31939319-31939369	RPTEC	kidney:	n/a
34	chr6:31939322-31939372	Caco-2	colon:	n/a
35	chr6:31939319-31939369	AG04449	skin:	fetal
36	chr6:31939322-31939372	SAEC	small airway:	n/a
37	chr6:31939322-31939372	H1-hESC	embryonic stem cell:	embryo
38	chr6:31939319-31939369	HNPCEpiC	eye:	n/a
39	chr6:31939322-31939372	HRPEpiC	eye:	n/a
40	chr6:31939322-31939372	NHBE	bronchial:	n/a
41	chr6:31939319-31939369	AG10803	skin:	n/a
42	chr6:31939319-31939369	NH-A	brain:	n/a
43	chr6:31939322-31939372	HRE	kidney:	n/a
44	chr6:31939322-31939372	HMEC	breast:	n/a
45	chr6:31939322-31939372	HUVEC	blood vessel:	n/a
46	chr6:31939322-31939372	LNCaP	prostate:	n/a
47	chr6:31939319-31939369	IMR90	lung:	fetal
48	chr6:31939319-31939369	PFSK-1	brain:	n/a
49	chr6:31939322-31939372	RPTEC	kidney:	n/a
50	chr6:31939319-31939369	A549	lung:	n/a

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31802844..31805158-chr6:31938598..31941453,3	K562	blood:
2	chr6:31763649..31765429-chr6:31938517..31942129,4	K562	blood:
3	chr6:31938655..31941642-chr6:32120425..32122384,2	K562	blood:
4	chr6:31867614..31871926-chr6:31937988..31942087,9	K562	blood:
5	chr6:31697890..31700450-chr6:31939330..31941948,2	K562	blood:
6	chr6:31864068..31872693-chr6:31934470..31941847,12	MCF-7	breast:
7	chr6:31781426..31784987-chr6:31937458..31940746,3	K562	blood:
8	chr6:31705460..31708202-chr6:31937853..31939865,2	K562	blood:
9	chr6:31887719..31889549-chr6:31938108..31940067,2	MCF-7	breast:
10	chr6:31938465..31944613-chr6:32012205..32018958,7	K562	blood:
11	chr6:31937794..31943427-chr6:31944150..31949640,18	K562	blood:
12	chr6:31866210..31871385-chr6:31935988..31941288,8	K562	blood:
13	chr6:31939077..31941209-chr6:32144185..32146901,2	MCF-7	breast:
14	chr6:31938465..31941001-chr6:32013795..32015947,2	K562	blood:
15	chr6:31863628..31867852-chr6:31937946..31941812,10	MCF-7	breast:
16	chr6:31900289..31902605-chr6:31938581..31941421,2	K562	blood:
17	chr6:31938785..31941869-chr6:32936192..32938386,3	MCF-7	breast:
18	chr6:31631495..31634660-chr6:31935613..31943206,9	K562	blood:
19	chr6:31868706..31872478-chr6:31938286..31942065,5	MCF-7	breast:
20	chr12:92539371..92539895-chr6:31939185..31940090,2	Hela-S3	cervix:
21	chr6:31863236..31865768-chr6:31937517..31940391,2	K562	blood:
22	chr6:31937366..31939733-chr6:32937181..32939543,3	K562	blood:
23	chr6:31632223..31634660-chr6:31938839..31941215,3	K562	blood:
24	chr6:31801458..31804077-chr6:31939275..31941249,3	MCF-7	breast:
25	chr6:31587332..31589434-chr6:31937953..31940828,2	K562	blood:
26	chr6:31794009..31796794-chr6:31937769..31941181,3	K562	blood:
27	chr6:31830673..31832900-chr6:31938643..31940364,3	MCF-7	breast:
28	chr6:31938987..31942159-chr6:31944563..31949146,6	MCF-7	breast:
29	chr6:31705740..31708202-chr6:31937563..31940759,3	K562	blood:
30	chr6:31701251..31705281-chr6:31936091..31940341,4	K562	blood:
31	chr6:31802366..31805115-chr6:31938170..31940148,2	K562	blood:

No data

Variant related genes	Relation type
STK19	TF binding region
DXO	TF binding region
STK19	CpG island
DXO	CpG island
ENSG00000166278	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000201754	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000204308	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000255152	Chromatin interaction
ENSG00000168477	Chromatin interaction
ENSG00000133639	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000204410	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000204388	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17201248	0.80[EUR][1000 genomes]
rs28441225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911893	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs61504963	0.86[EUR][1000 genomes]
rs6905149	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
9	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
10	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
11	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
12	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
13	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
14	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
15	nsv427751	chr6:31871512-32092843	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
16	nsv428141	chr6:31871512-32092843	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
17	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
18	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
19	nsv830628	chr6:31887554-31947600	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
20	nsv933250	chr6:31905060-32008005	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
21	nsv934279	chr6:31905060-32013902	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
22	nsv884513	chr6:31922575-32066025	Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
23	nsv884514	chr6:31923052-31958960	Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
24	nsv932869	chr6:31924496-32013902	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
25	nsv933913	chr6:31924682-32009282	Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
26	nsv284	chr6:31925739-31996721	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
27	nsv5247	chr6:31925739-32023216	Transcr. at gene 5' and 3' Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
28	nsv884515	chr6:31930805-31946614	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
29	nsv884516	chr6:31931673-31946614	Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
30	nsv884517	chr6:31931673-32057627	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
31	nsv538190	chr6:31932347-32037290	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
32	nsv884518	chr6:31933518-31946614	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	50 gene(s)	inside rSNPs	diseases
33	nsv884519	chr6:31937116-31947594	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
34	nsv884520	chr6:31938291-31946614	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
35	nsv601970	chr6:31938451-31948029	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
36	nsv601971	chr6:31939265-32014456	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31927600-31939400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:31937800-31939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:31938200-31939600	Flanking Active TSS	NH-A	brain
4	chr6:31938200-31940800	Active TSS	Fetal Kidney	kidney
5	chr6:31938200-31940800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:31938400-31939400	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr6:31938400-31939600	Flanking Active TSS	GM12878-XiMat	blood
8	chr6:31938400-31939600	Flanking Active TSS	HMEC	breast
9	chr6:31938400-31939600	Flanking Active TSS	Osteobl	bone
10	chr6:31938400-31939800	Flanking Active TSS	Liver	Liver
11	chr6:31938400-31939800	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr6:31938400-31939800	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr6:31938400-31939800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr6:31938600-31939400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:31938600-31939400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:31938600-31939400	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr6:31938600-31939400	Enhancers	Fetal Heart	heart
18	chr6:31938600-31939400	Flanking Active TSS	Pancreas	Pancrea
19	chr6:31938600-31939400	Flanking Active TSS	HUVEC	blood vessel
20	chr6:31938600-31939600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:31938600-31939600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:31938600-31939600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:31938600-31939600	Flanking Active TSS	Fetal Brain Female	brain
24	chr6:31938600-31939800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr6:31938600-31939800	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr6:31938600-31939800	Flanking Active TSS	Dnd41	blood
27	chr6:31938600-31939800	Flanking Active TSS	K562	blood
28	chr6:31938800-31939400	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr6:31938800-31939400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
30	chr6:31938800-31939400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
31	chr6:31938800-31939400	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
32	chr6:31938800-31939400	Flanking Active TSS	Right Ventricle	heart
33	chr6:31938800-31939400	Flanking Active TSS	NHDF-Ad	bronchial
34	chr6:31938800-31939600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:31938800-31939600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr6:31938800-31939600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr6:31938800-31939600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:31938800-31939600	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr6:31938800-31939600	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr6:31938800-31939600	Flanking Active TSS	HSMM	muscle
41	chr6:31938800-31939600	Flanking Active TSS	NHEK	skin
42	chr6:31938800-31939800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:31938800-31939800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:31938800-31939800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:31938800-31939800	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr6:31938800-31939800	Flanking Active TSS	Colonic Mucosa	Colon
47	chr6:31938800-31939800	Flanking Active TSS	Fetal Thymus	thymus
48	chr6:31938800-31939800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr6:31938800-31939800	Flanking Active TSS	Thymus	Thymus
50	chr6:31938800-31940600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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