Variant report

Variant	rs41267667
Chromosome Location	chr6:34100968-34100969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:34099833-34101219	PANC-1	pancreas:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
2	REST	chr6:34099288-34101630	HL-60	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34101369-34101387 chr6:34100501-34100514 chr6:34100494-34100514
3	REST	chr6:34099731-34101266	ECC-1	luminal epithelium:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
4	REST	chr6:34099868-34101172	MCF-7	breast:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
5	REST	chr6:34099241-34101379	PFSK-1	brain:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
6	REST	chr6:34099776-34101024	SK-N-SH	brain:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
7	REST	chr6:34100924-34101146	PANC-1	pancreas:	n/a	n/a
8	REST	chr6:34099758-34101298	ECC-1	luminal epithelium:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
9	REST	chr6:34100228-34101167	PANC-1	pancreas:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
10	REST	chr6:34099961-34101012	HCT-116	colon:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
11	REST	chr6:34100298-34100993	GM12878	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
12	REST	chr6:34099779-34101001	GM12878	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
13	REST	chr6:34100254-34101043	GM12878	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
14	REST	chr6:34099547-34100980	H1-neurons	neurons:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
15	REST	chr6:34099904-34101119	MCF-7	breast:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
16	REST	chr6:34099179-34101652	PFSK-1	brain:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34101369-34101387 chr6:34100501-34100514 chr6:34100494-34100514
17	REST	chr6:34099790-34101250	PANC-1	pancreas:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
18	REST	chr6:34099731-34101255	PANC-1	pancreas:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
19	REST	chr6:34099860-34101226	PFSK-1	brain:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
20	REST	chr6:34099731-34101223	K562	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
21	REST	chr6:34099950-34101230	HCT-116	colon:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
22	REST	chr6:34099855-34101138	A549	lung:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
23	REST	chr6:34099958-34100985	K562	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514
24	REST	chr6:34099833-34101169	HL-60	blood:	n/a	chr6:34100494-34100508 chr6:34100498-34100511 chr6:34100119-34100132 chr6:34100494-34100514 chr6:34100495-34100513 chr6:34100498-34100511 chr6:34100494-34100514 chr6:34100496-34100506 chr6:34100501-34100514 chr6:34100494-34100514

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:34100967-34101017	AoSMC	blood vessel:	n/a
2	chr6:34100967-34101017	MCF10A-Er-Src	breast:	n/a
3	chr6:34100963-34101013	ECC-1	luminal epithelium:	n/a
4	chr6:34100963-34101013	GM12891	blood:	n/a
5	chr6:34100963-34101013	CMK	blood:	n/a
6	chr6:34100963-34101013	GM06990	blood:	n/a
7	chr6:34100967-34101017	PrEC	prostate:	n/a
8	chr6:34100963-34101013	HPAEpiC	pulmonary alveolar:	n/a
9	chr6:34100963-34101013	Hepatocyte	liver:	n/a
10	chr6:34100963-34101013	SK-N-SH_RA	brain:	n/a
11	chr6:34100963-34101013	AG04449	skin:	fetal
12	chr6:34100967-34101017	K562	blood:	n/a
13	chr6:34100963-34101013	LNCaP	prostate:	n/a
14	chr6:34100963-34101013	HCM	heart:	n/a
15	chr6:34100967-34101017	NHDF-neo	bronchial:	n/a
16	chr6:34100967-34101017	GM06990	blood:	n/a
17	chr6:34100963-34101013	AG10803	skin:	n/a
18	chr6:34100963-34101013	PFSK-1	brain:	n/a
19	chr6:34100967-34101017	GM12891	blood:	n/a
20	chr6:34100963-34101013	SKMC	muscle:	n/a
21	chr6:34100963-34101013	HIPEpiC	eye:	n/a
22	chr6:34100963-34101013	Jurkat	blood:	n/a
23	chr6:34100963-34101013	NHBE	bronchial:	n/a
24	chr6:34100967-34101017	HRCEpiC	kidney:	n/a
25	chr6:34100963-34101013	AG09319	gingival:	n/a
26	chr6:34100967-34101017	RPTEC	kidney:	n/a
27	chr6:34100963-34101013	BJ	skin:	n/a
28	chr6:34100963-34101013	HEK293	kidney:	embryo
29	chr6:34100967-34101017	PANC-1	pancreas:	n/a
30	chr6:34100967-34101017	AG04449	skin:	fetal
31	chr6:34100967-34101017	LNCaP	prostate:	n/a
32	chr6:34100967-34101017	GM12878	blood:	n/a
33	chr6:34100967-34101017	HCT-116	colon:	n/a
34	chr6:34100967-34101017	ECC-1	luminal epithelium:	n/a
35	chr6:34100963-34101013	K562	blood:	n/a
36	chr6:34100963-34101013	ovcar-3	ovarian:	n/a
37	chr6:34100963-34101013	HUVEC	blood vessel:	n/a
38	chr6:34100963-34101013	MCF-7	breast:	n/a
39	chr6:34100963-34101013	GM19239	blood:	n/a
40	chr6:34100967-34101017	AG04450	lung:	fetal
41	chr6:34100967-34101017	SKMC	muscle:	n/a
42	chr6:34100967-34101017	NB4	blood:	n/a
43	chr6:34100963-34101013	HCF	heart:	n/a
44	chr6:34100967-34101017	BJ	skin:	n/a
45	chr6:34100967-34101017	NT2-D1	testis:	n/a
46	chr6:34100963-34101013	H1-hESC	embryonic stem cell:	embryo
47	chr6:34100967-34101017	SK-N-MC	brain:	n/a
48	chr6:34100963-34101013	IMR90	lung:	fetal
49	chr6:34100967-34101017	HEEpiC	esophagus:	n/a
50	chr6:34100963-34101013	HCT-116	colon:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34100230..34104042-chr6:34111323..34114936,4	K562	blood:

Variant related genes	Relation type
GRM4	TF binding region
GRM4	CpG island
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11755375	1.00[AFR][1000 genomes]
rs11757680	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885779	chr6:34046131-34103662	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34025000-34101800	Weak transcription	Right Atrium	heart
2	chr6:34097000-34101000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:34097200-34101000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr6:34099600-34106200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:34100000-34104200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:34100200-34101200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:34100200-34106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:34100400-34101000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:34100400-34101000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:34100400-34101600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:34100400-34101800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:34100400-34102000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:34100400-34102400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:34100800-34101000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:34100800-34101600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:34100800-34104000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:34100800-34104400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:34100800-34105000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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