The 2.0 version of rSNPBase

Variant report

Variant rs41270571
Chromosome Location chr6:82456904-82456905
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:82437800-82459400 Weak transcription Pancreas Pancrea
2 chr6:82446000-82459600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr6:82449600-82458800 Weak transcription Fetal Lung lung
4 chr6:82451200-82457800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr6:82451800-82457000 Weak transcription Stomach Mucosa stomach
6 chr6:82453400-82457000 Enhancers Fetal Heart heart
7 chr6:82453800-82457000 Weak transcription HepG2 liver
8 chr6:82453800-82460000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr6:82454000-82458600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr6:82454000-82459400 Enhancers Primary neutrophils fromperipheralblood blood
11 chr6:82454000-82459400 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr6:82454000-82459400 Weak transcription Fetal Muscle Trunk muscle
13 chr6:82454200-82459000 Weak transcription Colonic Mucosa Colon
14 chr6:82454800-82457000 Weak transcription Duodenum Mucosa Duodenum
15 chr6:82454800-82457000 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr6:82455000-82457000 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
17 chr6:82455000-82457000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr6:82455000-82457200 Enhancers Psoas Muscle Psoas
19 chr6:82455000-82459400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr6:82455200-82457000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr6:82455200-82457400 Strong transcription Breast Myoepithelial Primary Cells Breast
22 chr6:82455200-82457600 Genic enhancers Primary hematopoietic stem cells short term culture blood
23 chr6:82455200-82457600 Strong transcription Muscle Satellite Cultured Cells --
24 chr6:82455200-82458600 Strong transcription Osteobl bone
25 chr6:82455200-82464000 Active TSS Right Ventricle heart
26 chr6:82455400-82457400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr6:82455400-82457400 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr6:82455400-82457600 Genic enhancers Placenta Amnion Placenta Amnion
29 chr6:82455400-82458800 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr6:82455400-82458800 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr6:82455400-82458800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr6:82455400-82458800 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr6:82455400-82459200 Weak transcription Primary B cells from peripheral blood blood
34 chr6:82455600-82457200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr6:82455600-82457200 Strong transcription NHLF lung
36 chr6:82455600-82457600 Strong transcription HSMM muscle
37 chr6:82455600-82457800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr6:82455600-82458600 Genic enhancers Primary monocytes fromperipheralblood blood
39 chr6:82455800-82457000 Genic enhancers Monocytes-CD14+_RO01746 blood
40 chr6:82455800-82457400 Strong transcription NH-A brain
41 chr6:82455800-82457600 Strong transcription Primary hematopoietic stem cells blood
42 chr6:82455800-82459400 Weak transcription Spleen Spleen
43 chr6:82456000-82461000 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr6:82456200-82457200 Transcr. at gene 5' and 3' Left Ventricle heart
45 chr6:82456200-82457600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr6:82456200-82457600 Genic enhancers Fetal Intestine Large intestine
47 chr6:82456200-82458400 Genic enhancers Liver Liver
48 chr6:82456200-82459800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr6:82456200-82460600 Weak transcription Esophagus oesophagus
50 chr6:82456400-82457000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015