Variant report

Variant	rs41273078
Chromosome Location	chr7:18875084-18875085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73071792	1.00[EUR][1000 genomes]
rs73312692	0.93[EUR][1000 genomes]
rs73312699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320009	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18866800-18885200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18867200-18882400	Weak transcription	Left Ventricle	heart
3	chr7:18868200-18879400	Weak transcription	HSMMtube	muscle
4	chr7:18868800-18887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:18874200-18875200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:18874200-18875200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:18874200-18875200	Enhancers	Fetal Kidney	kidney
8	chr7:18874200-18875600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:18874400-18875400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:18874400-18875600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:18874400-18875600	Strong transcription	Aorta	Aorta
12	chr7:18874600-18875200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:18874600-18875400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:18874800-18875200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:18874800-18875200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:18874800-18875400	Enhancers	NHDF-Ad	bronchial
17	chr7:18875000-18876600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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