Variant report

Variant	rs41273098
Chromosome Location	chr6:37783844-37783845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12209653	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581538	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581755	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581906	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648055	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37776000-37785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:37776400-37785800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:37777200-37786000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37781400-37785800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:37781400-37785800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:37783400-37784600	Enhancers	HepG2	liver
7	chr6:37783600-37784800	Weak transcription	Fetal Kidney	kidney
8	chr6:37783600-37785200	Enhancers	HSMMtube	muscle
9	chr6:37783800-37784800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:37783800-37785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:37783800-37785800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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