Variant report

Variant	rs41273557
Chromosome Location	chr3:100621683-100621684
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13072000	0.80[EUR][1000 genomes]
rs13099053	0.80[EUR][1000 genomes]
rs2245473	0.80[EUR][1000 genomes]
rs35090886	0.88[EUR][1000 genomes]
rs41273553	0.80[EUR][1000 genomes]
rs4928096	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100599600-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr3:100612000-100622800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:100612200-100632200	Weak transcription	Fetal Stomach	stomach
4	chr3:100617200-100629400	Weak transcription	Ovary	ovary
5	chr3:100617400-100622000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:100617600-100622000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:100617600-100641000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:100617800-100641000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:100619600-100623000	Enhancers	Osteobl	bone
10	chr3:100620000-100623200	Enhancers	NHDF-Ad	bronchial
11	chr3:100620200-100623400	Enhancers	HUVEC	blood vessel
12	chr3:100621000-100621800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:100621000-100621800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:100621000-100622000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:100621000-100622400	Enhancers	NHLF	lung
16	chr3:100621200-100621800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:100621400-100622400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:100621600-100622000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:100621600-100633400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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