Variant report

Variant	rs41274322
Chromosome Location	chr18:25593713-25593714
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17445819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446323	0.81[AFR][1000 genomes]
rs17468226	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298574	0.85[ASN][1000 genomes]
rs28365282	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28365284	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6508523	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7238774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646566	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25556200-25595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25580600-25595800	Weak transcription	Left Ventricle	heart
3	chr18:25582600-25594000	Weak transcription	Dnd41	blood
4	chr18:25583600-25599000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
6	chr18:25584400-25594200	Weak transcription	Brain Anterior Caudate	brain
7	chr18:25584400-25595000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:25585800-25594000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr18:25589800-25593800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:25589800-25611000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr18:25590000-25596000	Weak transcription	Fetal Brain Female	brain
12	chr18:25590600-25593800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:25591400-25593800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
14	chr18:25591400-25594400	Enhancers	Fetal Lung	lung
15	chr18:25591600-25595800	Weak transcription	HepG2	liver
16	chr18:25592000-25594000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr18:25592000-25595200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr18:25592000-25599000	Weak transcription	Liver	Liver
19	chr18:25592400-25611000	Weak transcription	Brain Germinal Matrix	brain
20	chr18:25592600-25594200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:25592800-25594000	Weak transcription	Fetal Stomach	stomach
22	chr18:25592800-25594400	Enhancers	A549	lung
23	chr18:25593400-25593800	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr18:25593400-25596200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr18:25593600-25593800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr18:25593600-25593800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr18:25593600-25593800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr18:25593600-25593800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr18:25593600-25593800	Enhancers	Brain Angular Gyrus	brain
30	chr18:25593600-25593800	Genic enhancers	HSMM	muscle
31	chr18:25593600-25593800	Genic enhancers	NH-A	brain
32	chr18:25593600-25594200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr18:25593600-25594400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr18:25593600-25594400	Enhancers	Right Atrium	heart
35	chr18:25593600-25595200	Enhancers	Fetal Kidney	kidney
36	chr18:25593600-25595800	Enhancers	Osteobl	bone
37	chr18:25593600-25612000	Weak transcription	HUVEC	blood vessel

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