Variant report

Variant	rs41274410
Chromosome Location	chr9:96327104-96327105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96212024..96217170-chr9:96326121..96330116,7	MCF-7	breast:
2	chr9:96322191..96324124-chr9:96324483..96327194,2	K562	blood:
3	chr9:96324507..96327332-chr9:96327489..96329838,2	K562	blood:
4	chr9:96239972..96242150-chr9:96326116..96327649,2	MCF-7	breast:
5	chr9:96319216..96322786-chr9:96325553..96328069,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv968731	chr9:96326630-96327839	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:96285400-96327800	Strong transcription	Liver	Liver
9	chr9:96299400-96327800	Strong transcription	Placenta	Placenta
10	chr9:96301200-96327200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:96302000-96328000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:96304400-96328200	Strong transcription	Adipose Nuclei	Adipose
13	chr9:96305400-96327200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:96305400-96327600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:96307600-96329000	Weak transcription	Right Atrium	heart
16	chr9:96312200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:96312400-96328000	Strong transcription	Hela-S3	cervix
18	chr9:96312600-96329000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:96312800-96328200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr9:96313000-96327200	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr9:96316600-96327200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:96317000-96327800	Strong transcription	HSMM	muscle
23	chr9:96318000-96327800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr9:96318000-96327800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:96318200-96327200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:96320400-96328400	Weak transcription	Fetal Heart	heart
27	chr9:96321200-96328800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:96322400-96329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:96323400-96327200	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr9:96324000-96327200	Strong transcription	Brain Cingulate Gyrus	brain
31	chr9:96324200-96327600	Strong transcription	Brain Substantia Nigra	brain
32	chr9:96324800-96327800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:96324800-96328600	Weak transcription	Stomach Mucosa	stomach
34	chr9:96325000-96328800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:96325000-96329000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr9:96325600-96329000	Weak transcription	Small Intestine	intestine
37	chr9:96325800-96327600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:96325800-96327800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:96325800-96328400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr9:96325800-96328600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr9:96326000-96328400	Weak transcription	Primary B cells from cord blood	blood
42	chr9:96326000-96328600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:96326000-96328600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr9:96326000-96329000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:96326200-96328400	Weak transcription	Fetal Kidney	kidney
46	chr9:96326200-96328600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr9:96326200-96328600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:96326200-96328600	Weak transcription	Brain Germinal Matrix	brain
49	chr9:96326200-96328600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr9:96326200-96329000	Weak transcription	Pancreas	Pancrea

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