Variant report

Variant	rs41276473
Chromosome Location	chr3:56766138-56766139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4610196	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251257	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62251259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7638200	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440152	chr3:56764403-56773941	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56753400-56766200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56754400-56783200	Weak transcription	Stomach Mucosa	stomach
3	chr3:56755200-56781800	Weak transcription	NH-A	brain
4	chr3:56756400-56767200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:56756600-56766200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:56756800-56781000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:56757000-56786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:56757200-56767200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr3:56757200-56767400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
11	chr3:56758000-56768600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:56758000-56768800	Weak transcription	NHDF-Ad	bronchial
13	chr3:56758600-56766800	Strong transcription	HSMM	muscle
14	chr3:56758600-56767000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:56758600-56767000	Strong transcription	Lung	lung
16	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:56758800-56766400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:56758800-56766800	Strong transcription	Fetal Muscle Leg	muscle
19	chr3:56758800-56767000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:56758800-56767000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:56758800-56767400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:56758800-56770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:56758800-56782800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr3:56759000-56766600	Strong transcription	Adipose Nuclei	Adipose
25	chr3:56759000-56774400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:56759400-56784000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:56759600-56773200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:56759800-56767200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:56759800-56779000	Weak transcription	Liver	Liver
30	chr3:56759800-56790400	Strong transcription	Dnd41	blood
31	chr3:56760000-56767000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr3:56760000-56768600	Strong transcription	Thymus	Thymus
33	chr3:56760400-56766800	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:56760400-56773200	Strong transcription	Primary B cells from cord blood	blood
35	chr3:56760600-56766200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:56760600-56766800	Strong transcription	Placenta	Placenta
37	chr3:56760600-56768000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:56760600-56769400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:56760800-56766400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr3:56760800-56766400	Strong transcription	Fetal Brain Female	brain
41	chr3:56760800-56767000	Strong transcription	HepG2	liver
42	chr3:56760800-56773200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr3:56760800-56783000	Weak transcription	Osteobl	bone
44	chr3:56760800-56788800	Strong transcription	Fetal Thymus	thymus
45	chr3:56761200-56766200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
46	chr3:56761200-56767400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:56761600-56767000	Strong transcription	GM12878-XiMat	blood
48	chr3:56761800-56766200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:56761800-56766800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr3:56762000-56766400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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