Variant report

Variant	rs41277341
Chromosome Location	chr22:27878443-27878444
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27869390..27870927-chr22:27877522..27879598,2	MCF-7	breast:
2	chr22:27872577..27874378-chr22:27877562..27879901,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16984797	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16984850	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834167	chr22:27758395-27910985	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv834168	chr22:27859692-28061869	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27871800-27884600	Weak transcription	Right Atrium	heart
2	chr22:27873000-27884600	Weak transcription	Gastric	stomach
3	chr22:27875000-27878600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr22:27875000-27881600	Weak transcription	NHEK	skin
5	chr22:27875200-27880000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:27875800-27879000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr22:27876200-27879200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr22:27876200-27879800	Enhancers	Brain Germinal Matrix	brain
9	chr22:27876400-27880000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr22:27876600-27883800	Weak transcription	Pancreas	Pancrea
11	chr22:27876800-27882400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr22:27876800-27884800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr22:27877000-27879600	Enhancers	Fetal Stomach	stomach
14	chr22:27877000-27884600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr22:27877400-27878600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr22:27877400-27878800	Weak transcription	Brain Hippocampus Middle	brain
17	chr22:27877400-27883400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr22:27877600-27879400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr22:27877600-27879800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr22:27877800-27879000	Enhancers	Fetal Brain Female	brain
21	chr22:27878000-27878800	Weak transcription	Fetal Intestine Small	intestine
22	chr22:27878000-27883800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:27878200-27878800	Enhancers	Fetal Brain Male	brain
24	chr22:27878400-27878600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr22:27878400-27878600	Enhancers	Adipose Nuclei	Adipose
26	chr22:27878400-27878600	Enhancers	Brain Angular Gyrus	brain
27	chr22:27878400-27878800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr22:27878400-27878800	Enhancers	Fetal Thymus	thymus
29	chr22:27878400-27879000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr22:27878400-27879000	Enhancers	Brain Substantia Nigra	brain
31	chr22:27878400-27879000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links