Variant report

Variant	rs41278665
Chromosome Location	chr9:95142012-95142013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95134609..95136461-chr9:95140478..95143032,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35496743	1.00[AFR][1000 genomes]
rs35779901	1.00[AFR][1000 genomes]
rs41276829	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72752406	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95128400-95146600	Weak transcription	NHEK	skin
2	chr9:95135200-95149800	Weak transcription	Primary B cells from cord blood	blood
3	chr9:95135600-95148000	Weak transcription	Ovary	ovary
4	chr9:95137800-95143600	Weak transcription	Left Ventricle	heart
5	chr9:95138000-95152400	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
7	chr9:95139600-95142200	Enhancers	Fetal Thymus	thymus
8	chr9:95139800-95142600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:95139800-95143000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:95140200-95142600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:95140400-95142200	Enhancers	Fetal Intestine Small	intestine
12	chr9:95140400-95142800	Enhancers	Primary T cells from cord blood	blood
13	chr9:95140400-95148000	Weak transcription	Fetal Stomach	stomach
14	chr9:95140600-95144000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:95140600-95145000	Weak transcription	K562	blood
16	chr9:95140600-95145600	Weak transcription	Fetal Lung	lung
17	chr9:95141000-95142600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:95141000-95143200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr9:95141000-95143400	Enhancers	NHDF-Ad	bronchial
20	chr9:95141200-95142200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:95141200-95142200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr9:95141200-95142200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:95141200-95142200	Enhancers	NH-A	brain
24	chr9:95141200-95143200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr9:95141200-95143200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:95141200-95143400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr9:95141400-95142400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:95141400-95142800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:95141400-95143200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr9:95141600-95142600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:95141600-95143600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr9:95141600-95144600	Weak transcription	Small Intestine	intestine
33	chr9:95141600-95146200	Weak transcription	Osteobl	bone
34	chr9:95141800-95142200	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr9:95141800-95142600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr9:95141800-95142800	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr9:95141800-95143200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr9:95141800-95144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr9:95141800-95146600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:95142000-95142200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr9:95142000-95142200	Weak transcription	Dnd41	blood
42	chr9:95142000-95142400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:95142000-95142800	Enhancers	Primary hematopoietic stem cells	blood
44	chr9:95142000-95143200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:95142000-95144200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:95142000-95159400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links