Variant report

Variant	rs41278683
Chromosome Location	chr9:95176704-95176705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10992334	0.89[EUR][1000 genomes]
rs12349712	1.00[AMR][1000 genomes]
rs13439959	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41277645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95169400-95183800	Weak transcription	Aorta	Aorta
2	chr9:95170000-95177600	Weak transcription	Thymus	Thymus
3	chr9:95173000-95176800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:95173200-95184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:95173200-95188400	Weak transcription	Fetal Heart	heart
6	chr9:95173800-95176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:95173800-95183400	Weak transcription	Fetal Stomach	stomach
8	chr9:95173800-95183400	Weak transcription	Ovary	ovary
9	chr9:95176200-95177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:95176200-95177400	Enhancers	HUVEC	blood vessel
11	chr9:95176200-95177600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr9:95176200-95177600	Enhancers	Brain Substantia Nigra	brain
13	chr9:95176400-95177200	Enhancers	Primary hematopoietic stem cells	blood
14	chr9:95176400-95177200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:95176600-95177000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:95176600-95177000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:95176600-95177200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:95176600-95177800	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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