Variant report

Variant	rs41278691
Chromosome Location	chr9:118093478-118093479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11787534	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791623	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34159304	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118091000-118095000	Weak transcription	Fetal Lung	lung
2	chr9:118091400-118095200	Weak transcription	Fetal Stomach	stomach
3	chr9:118091400-118095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:118091600-118095800	Weak transcription	NHDF-Ad	bronchial
6	chr9:118092800-118093600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:118092800-118093600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:118093000-118093600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:118093200-118093600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr9:118093200-118095200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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