Variant report

Variant	rs41280905
Chromosome Location	chr16:71419252-71419253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11642618	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12931239	0.82[ASN][1000 genomes]
rs35906091	0.83[ASN][1000 genomes]
rs41280904	0.89[AFR][1000 genomes]
rs72791924	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3417792	chr16:71416447-71419521	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71398800-71419800	Weak transcription	Brain Germinal Matrix	brain
2	chr16:71416400-71419400	Strong transcription	Adipose Nuclei	Adipose
3	chr16:71416600-71419400	Enhancers	Esophagus	oesophagus
4	chr16:71416800-71420600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:71417600-71420600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:71417600-71421200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr16:71417800-71419600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:71417800-71420000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:71418000-71420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:71418200-71419400	Weak transcription	Fetal Brain Male	brain
11	chr16:71419000-71419600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr16:71419000-71419600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
13	chr16:71419000-71420000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr16:71419000-71420000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr16:71419000-71421800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:71419000-71422000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:71419200-71420800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr16:71419200-71421800	Enhancers	Fetal Stomach	stomach
19	chr16:71419200-71422600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr16:71419200-71422800	Enhancers	H1 Cell Line	embryonic stem cell

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