Variant report

Variant	rs41281631
Chromosome Location	chr22:30426871-30426872
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30426124..30429580-chr22:30433201..30436027,3	K562	blood:
2	chr22:30414773..30416390-chr22:30425475..30427413,2	MCF-7	breast:
3	chr22:30421588..30423711-chr22:30425219..30427810,2	K562	blood:
4	chr22:30421468..30423711-chr22:30425219..30428106,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12484778	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73164728	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30363400-30427800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr22:30390200-30434200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:30391400-30433000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr22:30409000-30432800	Strong transcription	Fetal Stomach	stomach
5	chr22:30412000-30431200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr22:30416400-30427200	Weak transcription	K562	blood
7	chr22:30419600-30434400	Weak transcription	Small Intestine	intestine
8	chr22:30419800-30427200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr22:30422200-30429000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr22:30422400-30427800	Weak transcription	Psoas Muscle	Psoas
11	chr22:30422400-30434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr22:30422400-30434200	Weak transcription	HUVEC	blood vessel
13	chr22:30422800-30429600	Weak transcription	NHDF-Ad	bronchial
14	chr22:30422800-30429800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr22:30423000-30429600	Weak transcription	Fetal Heart	heart
16	chr22:30423000-30432600	Weak transcription	NH-A	brain
17	chr22:30423400-30429400	Weak transcription	Colon Smooth Muscle	Colon
18	chr22:30423400-30429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr22:30423400-30429600	Weak transcription	GM12878-XiMat	blood
20	chr22:30423400-30430800	Strong transcription	Fetal Intestine Small	intestine
21	chr22:30423400-30432400	Weak transcription	Stomach Mucosa	stomach
22	chr22:30423400-30434400	Weak transcription	A549	lung
23	chr22:30423600-30447600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr22:30423800-30427200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr22:30424200-30429600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr22:30424200-30429800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr22:30424200-30434000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr22:30424400-30429400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr22:30424400-30429800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr22:30424400-30431400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr22:30424600-30427000	Weak transcription	Ovary	ovary
32	chr22:30424600-30427600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr22:30424600-30429600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr22:30424600-30429800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr22:30424600-30432600	Weak transcription	HMEC	breast
36	chr22:30424600-30435600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr22:30424800-30427800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr22:30424800-30429600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr22:30424800-30432400	Weak transcription	Colonic Mucosa	Colon
40	chr22:30424800-30443000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr22:30425000-30429600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr22:30425000-30430600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr22:30425000-30434200	Weak transcription	Gastric	stomach
44	chr22:30425200-30427000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr22:30425200-30427000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr22:30425200-30427000	Weak transcription	Fetal Thymus	thymus
47	chr22:30425200-30427000	Weak transcription	Dnd41	blood
48	chr22:30425200-30429000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr22:30425200-30429000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr22:30425200-30429200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links