Variant report

Variant	rs41283642
Chromosome Location	chr9:101915887-101915888
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101914312..101916754-chr9:101918469..101920342,3	K562	blood:
2	chr9:101835256..101838008-chr9:101914700..101916909,2	K562	blood:
3	chr9:101906079..101907855-chr9:101915148..101917814,2	K562	blood:
4	chr9:101910109..101913329-chr9:101915349..101919610,4	K562	blood:
5	chr9:101915684..101917532-chr9:101919220..101922138,2	MCF-7	breast:

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	TGFBR1	hsa-miR-142-3p	chr9:101915867-101915888
2	TGFBR1	hsa-miR-142-3p	chr9:101915881-101915888

Variant related genes	Relation type
TGFBR1	miRNA target site

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61998194	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101892800-101921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:101898000-101919400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:101900800-101916800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:101903000-101921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:101904000-101916400	Strong transcription	Primary B cells from cord blood	blood
6	chr9:101904000-101917200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:101904600-101916200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:101907200-101919800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:101907800-101916600	Weak transcription	Fetal Brain Male	brain
10	chr9:101908200-101922000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:101908400-101916600	Weak transcription	NHLF	lung
12	chr9:101908400-101918000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:101908600-101924600	Weak transcription	Gastric	stomach
14	chr9:101909000-101918600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:101909000-101920000	Weak transcription	HepG2	liver
16	chr9:101909200-101918000	Weak transcription	Fetal Stomach	stomach
17	chr9:101909600-101916200	Weak transcription	Brain Anterior Caudate	brain
18	chr9:101910400-101920800	Weak transcription	K562	blood
19	chr9:101910600-101917600	Weak transcription	Ovary	ovary
20	chr9:101911000-101916400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:101911000-101920600	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:101911200-101918200	Weak transcription	Fetal Brain Female	brain
23	chr9:101911200-101921800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:101911200-101922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:101911400-101916200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr9:101911400-101916600	Weak transcription	HUVEC	blood vessel
27	chr9:101911400-101925000	Weak transcription	Dnd41	blood
28	chr9:101911600-101916600	Weak transcription	GM12878-XiMat	blood
29	chr9:101911600-101917000	Weak transcription	Fetal Kidney	kidney
30	chr9:101911600-101922000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:101911800-101916200	Weak transcription	Colonic Mucosa	Colon
32	chr9:101911800-101916200	Weak transcription	Fetal Intestine Large	intestine
33	chr9:101911800-101916600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:101911800-101917400	Weak transcription	Fetal Lung	lung
35	chr9:101911800-101920600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:101912200-101916600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:101912200-101916600	Weak transcription	Brain Germinal Matrix	brain
38	chr9:101912400-101916200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:101912400-101916600	Weak transcription	HMEC	breast
40	chr9:101912400-101922200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:101912600-101916000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:101913000-101918000	Weak transcription	NHDF-Ad	bronchial
44	chr9:101913000-101922000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:101913200-101916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:101913200-101921400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:101913400-101916400	Strong transcription	HSMM	muscle
48	chr9:101913400-101917800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:101913400-101919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:101913800-101916200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links