Variant report

Variant	rs41284944
Chromosome Location	chr10:91162182-91162183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2102698	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58769986	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61619045	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067930	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100580	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146946	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91152800-91173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91152800-91174000	Weak transcription	Gastric	stomach
3	chr10:91153000-91164200	Weak transcription	Esophagus	oesophagus
4	chr10:91153200-91163800	Weak transcription	Spleen	Spleen
5	chr10:91153200-91173600	Weak transcription	Brain Germinal Matrix	brain
6	chr10:91153400-91162200	Weak transcription	Placenta	Placenta
7	chr10:91153400-91162200	Weak transcription	Lung	lung
8	chr10:91153400-91163400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:91153400-91164000	Weak transcription	Pancreas	Pancrea
10	chr10:91153400-91172400	Weak transcription	Thymus	Thymus
11	chr10:91153600-91162200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:91153600-91162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:91153600-91165400	Weak transcription	Fetal Thymus	thymus
14	chr10:91153600-91173600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:91154000-91162200	Weak transcription	Primary T cells from cord blood	blood
16	chr10:91154000-91162200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:91154000-91162200	Weak transcription	Fetal Stomach	stomach
18	chr10:91154000-91162400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:91154000-91164200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr10:91154000-91166800	Weak transcription	Right Ventricle	heart
21	chr10:91154200-91162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:91154200-91162200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:91154200-91162200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:91154200-91164000	Weak transcription	Right Atrium	heart
25	chr10:91154200-91172400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:91154200-91173200	Weak transcription	Primary B cells from cord blood	blood
27	chr10:91154200-91173400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:91154200-91173400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:91154600-91162200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:91154600-91173000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:91154800-91163400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:91155200-91162200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:91155200-91162200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:91155200-91162200	Weak transcription	Aorta	Aorta
35	chr10:91155200-91162200	Weak transcription	Brain Anterior Caudate	brain
36	chr10:91155200-91162200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:91155200-91162200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:91155200-91164000	Weak transcription	Brain Angular Gyrus	brain
39	chr10:91155200-91173200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:91155400-91162200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:91155400-91162200	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:91155400-91162200	Weak transcription	Brain Substantia Nigra	brain
43	chr10:91155400-91162200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:91155400-91162400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr10:91155400-91162600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:91155400-91163800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:91155400-91172800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:91155400-91173600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:91155800-91162200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:91156400-91172400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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