Variant report

Variant	rs41286811
Chromosome Location	chr1:93101670-93101671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs41313373	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93052000-93119400	Weak transcription	NHEK	skin
2	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:93062000-93118800	Weak transcription	HMEC	breast
4	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:93065800-93119600	Weak transcription	NH-A	brain
6	chr1:93066800-93103000	Weak transcription	NHDF-Ad	bronchial
7	chr1:93066800-93114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:93068600-93112600	Weak transcription	Brain Substantia Nigra	brain
9	chr1:93068800-93103200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:93069400-93104600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:93082600-93108600	Weak transcription	Psoas Muscle	Psoas
13	chr1:93083600-93106400	Weak transcription	Pancreas	Pancrea
14	chr1:93084200-93104000	Weak transcription	Spleen	Spleen
15	chr1:93089800-93114200	Weak transcription	HSMM	muscle
16	chr1:93098400-93205400	Weak transcription	NHLF	lung
17	chr1:93100000-93101800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:93100200-93101800	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr1:93100200-93102000	Strong transcription	Adipose Nuclei	Adipose
20	chr1:93100200-93102000	Strong transcription	Fetal Intestine Large	intestine
21	chr1:93100200-93102000	Strong transcription	Fetal Lung	lung
22	chr1:93100200-93102000	Strong transcription	Placenta	Placenta
23	chr1:93100400-93102000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:93100400-93102000	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr1:93100600-93102000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:93100600-93102000	Strong transcription	Liver	Liver
27	chr1:93100600-93102200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:93100600-93118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:93100800-93101800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:93100800-93102000	Strong transcription	Brain Angular Gyrus	brain
31	chr1:93100800-93102000	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:93100800-93102000	Strong transcription	Fetal Muscle Leg	muscle
33	chr1:93100800-93102000	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:93100800-93102200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:93100800-93102200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:93100800-93102200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:93101000-93101800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:93101000-93101800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:93101000-93101800	Strong transcription	Fetal Kidney	kidney
40	chr1:93101000-93101800	Strong transcription	Rectal Smooth Muscle	rectum
41	chr1:93101000-93101800	Strong transcription	Stomach Smooth Muscle	stomach
42	chr1:93101000-93101800	Strong transcription	HSMMtube	muscle
43	chr1:93101000-93102000	Strong transcription	Primary B cells from cord blood	blood
44	chr1:93101000-93102000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr1:93101000-93102000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:93101000-93102000	Strong transcription	A549	lung
47	chr1:93101000-93102200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:93101200-93102000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:93101200-93114600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:93101200-93118600	Weak transcription	Aorta	Aorta

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