Variant report

Variant	rs41294029
Chromosome Location	chr10:5993461-5993462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5991888..5994036-chr10:6455402..6457636,2	MCF-7	breast:
2	chr10:5990354..5995622-chr10:5995920..5999201,5	K562	blood:
3	chr10:5991870..5998426-chr10:6018061..6021300,7	MCF-7	breast:
4	chr10:5986740..5988267-chr10:5992658..5994802,2	MCF-7	breast:
5	chr10:5989579..5992507-chr10:5992737..5995204,2	MCF-7	breast:
6	chr10:5993229..5995375-chr10:6003228..6005603,2	MCF-7	breast:
7	chr10:5985207..5987889-chr10:5992554..5994635,2	K562	blood:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction
ENSG00000232807	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3181148	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:5980800-5994600	Weak transcription	Gastric	stomach
5	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
6	chr10:5981000-6003600	Weak transcription	Primary T cells from cord blood	blood
7	chr10:5982800-5995000	Weak transcription	GM12878-XiMat	blood
8	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
9	chr10:5986800-5995600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:5987000-5994600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
12	chr10:5987800-5993600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
14	chr10:5988000-5994000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:5988000-5995000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:5988000-6000800	Weak transcription	Colonic Mucosa	Colon
17	chr10:5988000-6001400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:5988200-5993600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:5988200-5994200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:5988200-5994600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr10:5988200-5998600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:5988200-6001800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:5988400-5994000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:5988400-5994000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:5988400-5994000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:5988400-5994400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:5988400-6001200	Weak transcription	Ovary	ovary
28	chr10:5988400-6001600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:5988600-5994000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:5988600-6011800	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:5989200-5994000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:5989200-5994600	Weak transcription	Lung	lung
33	chr10:5989200-5994800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:5989200-6001600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:5989400-5993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:5989400-5993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:5989400-6001200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:5991000-5993600	Enhancers	Adipose Nuclei	Adipose
39	chr10:5991000-5993800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:5991000-5993800	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr10:5991000-5994000	Enhancers	Pancreas	Pancrea
42	chr10:5991200-5994200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr10:5991200-5994200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:5991200-5994800	Enhancers	Stomach Mucosa	stomach
45	chr10:5991400-5999000	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:5991400-6000800	Weak transcription	K562	blood
47	chr10:5991400-6004800	Weak transcription	Brain Anterior Caudate	brain
48	chr10:5991600-5994400	Weak transcription	Fetal Stomach	stomach
49	chr10:5991600-5994600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:5992200-5993600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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