Variant report

Variant	rs41294187
Chromosome Location	chr10:6011406-6011407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:6010835-6011436	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6010165..6011838-chr10:6017031..6019574,2	MCF-7	breast:
2	chr10:6007113..6010005-chr10:6010444..6013465,3	K562	blood:
3	chr10:6002748..6006504-chr10:6008891..6012055,4	K562	blood:

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11574672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136612	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181147	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294035	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41294171	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294197	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41294199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294211	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
5	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
6	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
7	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
8	chr10:5988600-6011800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:5993600-6013200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:5994000-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:5994200-6012200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:5994200-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:5995400-6012400	Weak transcription	Small Intestine	intestine
14	chr10:5999400-6017600	Weak transcription	Primary B cells from cord blood	blood
15	chr10:6001000-6017400	Weak transcription	NHLF	lung
16	chr10:6002400-6017800	Weak transcription	Placenta	Placenta
17	chr10:6002800-6012400	Weak transcription	Hela-S3	cervix
18	chr10:6002800-6013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:6004200-6013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:6005400-6012000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:6005400-6013400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:6005400-6017400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:6005400-6017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:6005400-6018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:6005600-6013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:6005800-6012000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:6005800-6012800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr10:6005800-6013000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:6005800-6013400	Weak transcription	Esophagus	oesophagus
30	chr10:6005800-6018200	Weak transcription	Ovary	ovary
31	chr10:6007400-6012800	Weak transcription	Colonic Mucosa	Colon
32	chr10:6007400-6013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:6007400-6013200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:6007600-6012200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:6007600-6012800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:6007600-6018200	Weak transcription	Right Ventricle	heart
37	chr10:6008000-6013000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:6008400-6012000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:6008400-6013400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:6008400-6017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:6008600-6012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:6008600-6013000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:6008800-6013000	Weak transcription	Adipose Nuclei	Adipose
44	chr10:6010400-6013400	Enhancers	Liver	Liver
45	chr10:6010600-6013000	Enhancers	Stomach Mucosa	stomach
46	chr10:6010800-6011600	Enhancers	Right Atrium	heart
47	chr10:6010800-6012200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:6010800-6012800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:6010800-6012800	Weak transcription	Gastric	stomach
50	chr10:6010800-6013000	Enhancers	K562	blood

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