Variant report

Variant	rs41294390
Chromosome Location	chr11:64075186-64075187
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64072715..64075742-chr11:64108562..64111155,5	MCF-7	breast:
2	chr11:64037335..64038960-chr11:64074526..64076950,2	MCF-7	breast:
3	chr11:64068655..64075946-chr11:64105786..64111623,11	K562	blood:
4	chr11:64070986..64076286-chr11:64124810..64128616,7	K562	blood:
5	chr11:64033188..64045448-chr11:64059274..64075790,38	MCF-7	breast:
6	chr11:64073207..64075347-chr11:64577929..64579925,2	MCF-7	breast:
7	chr11:64003628..64022712-chr11:64064086..64078429,56	MCF-7	breast:
8	chr11:63990938..63995618-chr11:64068467..64075569,11	MCF-7	breast:
9	chr11:64071691..64076218-chr11:64119080..64123328,5	MCF-7	breast:
10	chr11:64073758..64075517-chr11:64122696..64124221,2	K562	blood:
11	chr11:64005251..64012775-chr11:64065543..64076594,19	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168071	Chromatin interaction
ENSG00000173457	Chromatin interaction
ENSG00000173511	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000149761	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000256940	Chromatin interaction
ENSG00000257086	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000149782	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs45553131	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55653360	1.00[ASN][1000 genomes]
rs60080768	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
11	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
12	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
15	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
16	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
17	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
18	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
19	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
20	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
21	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
22	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
23	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
25	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
26	nsv897687	chr11:64049021-64078380	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64073800-64075200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:64073800-64075400	Flanking Active TSS	Liver	Liver
3	chr11:64074000-64075200	Transcr. at gene 5' and 3'	K562	blood
4	chr11:64074000-64075400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
5	chr11:64074000-64084400	Weak transcription	Aorta	Aorta
6	chr11:64074200-64075200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:64074200-64075200	Enhancers	Fetal Heart	heart
8	chr11:64074200-64075400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:64074200-64084400	Weak transcription	Ovary	ovary
10	chr11:64074400-64075200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:64074400-64075200	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:64074400-64075200	Enhancers	Brain Angular Gyrus	brain
13	chr11:64074400-64075200	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:64074400-64075200	Enhancers	Brain Germinal Matrix	brain
15	chr11:64074400-64075200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:64074400-64075200	Enhancers	Gastric	stomach
17	chr11:64074400-64075200	Enhancers	Pancreas	Pancrea
18	chr11:64074400-64075200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:64074400-64075200	Enhancers	Right Atrium	heart
20	chr11:64074400-64075400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:64074400-64075400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:64074400-64075600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr11:64074400-64080600	Weak transcription	HSMMtube	muscle
24	chr11:64074400-64084200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:64074600-64075200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:64074600-64075200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:64074600-64075200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
28	chr11:64074600-64075200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr11:64074600-64075200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr11:64074600-64075200	Enhancers	Adipose Nuclei	Adipose
31	chr11:64074600-64075200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:64074600-64075200	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
33	chr11:64074600-64075200	Genic enhancers	Fetal Thymus	thymus
34	chr11:64074600-64075200	Genic enhancers	Right Ventricle	heart
35	chr11:64074600-64075200	Genic enhancers	Spleen	Spleen
36	chr11:64074600-64075200	Flanking Active TSS	HepG2	liver
37	chr11:64074600-64075400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:64074600-64075400	Enhancers	Primary T cells fromperipheralblood	blood
39	chr11:64074600-64075400	Genic enhancers	Brain Inferior Temporal Lobe	brain
40	chr11:64074600-64075400	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
41	chr11:64074600-64075400	Genic enhancers	Esophagus	oesophagus
42	chr11:64074600-64075400	Enhancers	Stomach Mucosa	stomach
43	chr11:64074600-64075400	Strong transcription	NHLF	lung
44	chr11:64074600-64075600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr11:64074600-64075800	Strong transcription	Fetal Stomach	stomach
46	chr11:64074600-64077400	Weak transcription	NHEK	skin
47	chr11:64074600-64078200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:64074600-64078400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:64074600-64080200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr11:64074600-64080400	Weak transcription	Brain Substantia Nigra	brain

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