Variant report

Variant	rs41294931
Chromosome Location	chr10:6103265-6103266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6101613..6103309-chr10:6128330..6130665,2	MCF-7	breast:
2	chr10:6101877..6103598-chr10:6244884..6246543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12722514	0.83[AMR][1000 genomes]
rs41294919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294923	1.00[EUR][1000 genomes]
rs41294925	1.00[EUR][1000 genomes]
rs41294929	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62626313	0.83[AMR][1000 genomes]
rs765060	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6093800-6104200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr10:6096200-6107400	Weak transcription	Placenta	Placenta
3	chr10:6096400-6103800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:6096600-6103600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6098000-6104400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:6099000-6103800	Weak transcription	Spleen	Spleen
7	chr10:6099000-6104000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:6099200-6103600	Weak transcription	Primary B cells from cord blood	blood
9	chr10:6099600-6103600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:6099800-6104000	Weak transcription	Lung	lung
11	chr10:6100000-6103800	Weak transcription	Left Ventricle	heart
12	chr10:6101600-6103800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:6101800-6103400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr10:6101800-6104800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:6102000-6104800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr10:6102000-6105200	Enhancers	Primary hematopoietic stem cells	blood
17	chr10:6102200-6103400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:6102200-6103600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:6102200-6104200	Active TSS	Colonic Mucosa	Colon
20	chr10:6102200-6104600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr10:6102200-6104600	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr10:6102200-6105000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:6102200-6107400	Weak transcription	Right Atrium	heart
24	chr10:6102200-6107400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:6102400-6103400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:6102400-6103400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:6102400-6104600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:6102600-6103400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:6102800-6103400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:6102800-6104400	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr10:6102800-6104400	Active TSS	Adipose Nuclei	Adipose
32	chr10:6103000-6103800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:6103000-6103800	Enhancers	Thymus	Thymus
34	chr10:6103200-6103600	Active TSS	GM12878-XiMat	blood
35	chr10:6103200-6104800	Flanking Active TSS	Primary T cells from cord blood	blood

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