Variant report

Variant	rs41295117
Chromosome Location	chr10:6125322-6125323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6124483..6126378-chr10:6128516..6131168,2	MCF-7	breast:
2	chr10:6117334..6119489-chr10:6124057..6125873,2	K562	blood:
3	chr10:6124462..6126940-chr10:6130262..6132996,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12722489	0.82[AMR][1000 genomes]
rs3118475	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs41295055	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs41295077	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41295079	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41295105	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62626317	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62626325	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6115600-6127800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:6121600-6125600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr10:6123800-6126600	Enhancers	Fetal Thymus	thymus
4	chr10:6124000-6125600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:6124400-6126200	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr10:6124400-6126400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr10:6124600-6125600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:6124600-6125600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:6124600-6126000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
10	chr10:6124600-6126200	Enhancers	Primary T cells from cord blood	blood
11	chr10:6124600-6126200	Enhancers	Right Atrium	heart
12	chr10:6124600-6126200	Enhancers	Thymus	Thymus
13	chr10:6124600-6126400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:6124600-6126800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:6124600-6128200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:6124800-6125600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:6124800-6125600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:6124800-6125800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:6124800-6126200	Enhancers	HUVEC	blood vessel
20	chr10:6124800-6126600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:6124800-6127000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:6124800-6128200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:6124800-6128200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:6124800-6131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:6125000-6125400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:6125000-6125400	Enhancers	Brain Germinal Matrix	brain
27	chr10:6125000-6125400	Weak transcription	Right Ventricle	heart
28	chr10:6125000-6125600	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr10:6125000-6125800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:6125000-6126000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:6125000-6126000	Enhancers	NH-A	brain
32	chr10:6125000-6126200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:6125000-6126200	Bivalent Enhancer	Osteobl	bone
34	chr10:6125000-6126600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr10:6125200-6125400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:6125200-6125400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:6125200-6125600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:6125200-6125600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:6125200-6125600	Enhancers	Small Intestine	intestine
40	chr10:6125200-6126000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:6125200-6126000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr10:6125200-6126000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr10:6125200-6126200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr10:6125200-6126200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
45	chr10:6125200-6126200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
46	chr10:6125200-6126400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:6125200-6126400	Enhancers	Left Ventricle	heart

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