Variant report

Variant	rs41295125
Chromosome Location	chr10:6133765-6133766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6099232..6101720-chr10:6133496..6135887,2	K562	blood:
2	chr10:6132741..6135647-chr10:6244936..6248119,3	MCF-7	breast:
3	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
4	chr10:6133090..6135580-chr10:6163939..6166361,2	K562	blood:
5	chr10:6081523..6083150-chr10:6133461..6135745,2	K562	blood:
6	chr10:6131418..6133941-chr10:6140772..6145305,6	K562	blood:
7	chr10:6131173..6133943-chr10:6186718..6189110,2	MCF-7	breast:
8	chr10:6128513..6130219-chr10:6132306..6134990,2	MCF-7	breast:
9	chr10:6131719..6134216-chr10:6253022..6254903,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs41295075	1.00[AFR][1000 genomes]
rs41295103	1.00[AFR][1000 genomes]
rs62626326	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6132000-6133800	Flanking Active TSS	Dnd41	blood
2	chr10:6132200-6134000	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:6132200-6134200	Enhancers	Small Intestine	intestine
4	chr10:6132200-6134400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:6132200-6135800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:6132200-6138200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:6132200-6139200	Weak transcription	Gastric	stomach
8	chr10:6132400-6133800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:6132400-6134000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:6132400-6134000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:6132400-6134200	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:6132400-6135000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:6132400-6135400	Enhancers	Primary B cells from cord blood	blood
14	chr10:6132400-6139000	Weak transcription	Esophagus	oesophagus
15	chr10:6132400-6139200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:6132400-6139200	Weak transcription	Aorta	Aorta
17	chr10:6132400-6139600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:6132600-6133800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:6132600-6133800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:6132600-6133800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:6132600-6134000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:6132600-6134000	Enhancers	Colon Smooth Muscle	Colon
23	chr10:6132600-6134000	Enhancers	Ovary	ovary
24	chr10:6132600-6134200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:6132600-6134200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:6132600-6134200	Enhancers	Brain Germinal Matrix	brain
27	chr10:6132600-6134400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:6132600-6134400	Enhancers	Liver	Liver
29	chr10:6132600-6134600	Enhancers	Duodenum Mucosa	Duodenum
30	chr10:6132600-6134800	Enhancers	Primary T cells from cord blood	blood
31	chr10:6132600-6134800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr10:6132600-6135000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:6132600-6135000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr10:6132600-6135000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:6132600-6135200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:6132600-6137600	Weak transcription	HSMM	muscle
37	chr10:6132600-6138600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:6132600-6139000	Weak transcription	Colonic Mucosa	Colon
39	chr10:6132600-6139200	Weak transcription	Pancreas	Pancrea
40	chr10:6132800-6133800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr10:6132800-6133800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:6132800-6133800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:6132800-6134000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:6132800-6134000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:6132800-6134000	Enhancers	Fetal Lung	lung
46	chr10:6132800-6134000	Enhancers	Left Ventricle	heart
47	chr10:6132800-6134000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr10:6132800-6134000	Enhancers	Thymus	Thymus
49	chr10:6132800-6134000	Enhancers	Hela-S3	cervix
50	chr10:6132800-6134000	Enhancers	HMEC	breast

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