Variant report

Variant	rs41297658
Chromosome Location	chr1:161493633-161493634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:178)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:178 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr1:161493538-161493759	GM12878	blood:	n/a	n/a
2	ELF1	chr1:161493530-161493931	GM12878	blood:	n/a	n/a
3	YY1	chr1:161493477-161493906	GM12878	blood:	n/a	n/a
4	KAP1	chr1:161493608-161494107	U2OS	brain:	n/a	n/a
5	ETS1	chr1:161493502-161493837	GM12878	blood:	n/a	n/a
6	TEAD4	chr1:161493528-161493974	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZEB1	chr1:161493518-161493778	GM12878	blood:	n/a	n/a
8	MAX	chr1:161493442-161494415	A549	lung:	n/a	n/a
9	STAT5A	chr1:161493524-161493855	GM12878	blood:	n/a	n/a
10	MYBL2	chr1:161493323-161494018	HepG2	liver:	n/a	n/a
11	TAF1	chr1:161493538-161493822	GM12878	blood:	n/a	n/a
12	GTF3C2	chr1:161493420-161494123	Hela-S3	cervix:	n/a	n/a
13	TEAD4	chr1:161493480-161494038	SK-N-SH	brain:	n/a	n/a
14	RUNX3	chr1:161493467-161494429	GM12878	blood:	n/a	n/a
15	NFIC	chr1:161493380-161494197	GM12878	blood:	n/a	n/a
16	HEY1	chr1:161493548-161493841	K562	blood:	n/a	n/a
17	TEAD4	chr1:161493438-161493993	ECC-1	luminal epithelium:	n/a	n/a
18	NFIC	chr1:161493425-161494167	GM12878	blood:	n/a	n/a
19	RPC155	chr1:161493370-161493969	Hela-S3	cervix:	n/a	n/a
20	MXI1	chr1:161493588-161493821	Hela-S3	cervix:	n/a	n/a
21	MAX	chr1:161493579-161493813	NB4	blood:	n/a	n/a
22	ZNF274	chr1:161493512-161493810	K562	blood:	n/a	n/a
23	TEAD4	chr1:161493485-161493832	H1-hESC	embryonic stem cell:	n/a	n/a
24	HEY1	chr1:161493514-161493810	K562	blood:	n/a	n/a
25	STAT1	chr1:161493631-161493792	GM12878	blood:	n/a	n/a
26	MAX	chr1:161493608-161494250	A549	lung:	n/a	n/a
27	MAZ	chr1:161493573-161494254	Hela-S3	cervix:	n/a	n/a
28	CBX3	chr1:161493440-161493848	K562	blood:	n/a	n/a
29	ETS1	chr1:161493540-161493820	K562	blood:	n/a	n/a
30	GTF2F1	chr1:161493520-161494027	Hela-S3	cervix:	n/a	n/a
31	TEAD4	chr1:161493591-161493869	MCF-7	breast:	n/a	n/a
32	IRF4	chr1:161493431-161493963	GM12878	blood:	n/a	n/a
33	ATF3	chr1:161493439-161494010	HCT-116	colon:	n/a	n/a
34	ATF2	chr1:161493531-161493936	H1-hESC	embryonic stem cell:	n/a	n/a
35	MAX	chr1:161493598-161494300	Hela-S3	cervix:	n/a	n/a
36	TAF7	chr1:161493540-161493893	H1-hESC	embryonic stem cell:	n/a	n/a
37	ETS1	chr1:161493320-161493805	A549	lung:	n/a	n/a
38	YY1	chr1:161493541-161493834	SK-N-SH_RA	brain:	n/a	n/a
39	TBP	chr1:161493509-161494122	GM12878	blood:	n/a	n/a
40	MTA3	chr1:161493432-161493936	GM12878	blood:	n/a	n/a
41	RCOR1	chr1:161493542-161494094	Hela-S3	cervix:	n/a	n/a
42	FOXM1	chr1:161493451-161494058	GM12878	blood:	n/a	n/a
43	FOXM1	chr1:161493457-161493905	GM12878	blood:	n/a	n/a
44	BDP1	chr1:161493510-161493981	Hela-S3	cervix:	n/a	chr1:161493965-161493978
45	BCLAF1	chr1:161493531-161493891	GM12878	blood:	n/a	n/a
46	HSF1	chr1:161493515-161494266	HepG2	liver:	n/a	chr1:161494149-161494158 chr1:161494144-161494160
47	FOSL2	chr1:161493447-161494232	SK-N-SH	brain:	n/a	chr1:161494188-161494200 chr1:161494084-161494095 chr1:161494081-161494092 chr1:161494189-161494199
48	REST	chr1:161493553-161493803	SK-N-SH	brain:	n/a	n/a
49	SIN3AK20	chr1:161493468-161493891	A549	lung:	n/a	n/a
50	JUND	chr1:161493492-161493827	A549	lung:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161492226..161495204-chr1:161574440..161576470,2	K562	blood:
2	chr1:161476098..161478578-chr1:161492224..161494274,2	K562	blood:

No data

Variant related genes	Relation type
HSPA6	TF binding region
ENSG00000143226	Chromatin interaction
ENSG00000225217	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157950	1.00[EUR][1000 genomes]
rs2045573	1.00[EUR][1000 genomes]
rs2045574	1.00[EUR][1000 genomes]
rs60491795	1.00[EUR][1000 genomes]
rs61348372	1.00[EUR][1000 genomes]
rs74127078	1.00[EUR][1000 genomes]
rs74127079	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv432998	chr1:161335902-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv433009	chr1:161343927-161639328	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1005812	chr1:161343951-161548101	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv535182	chr1:161343951-161548101	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
7	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
8	nsv433020	chr1:161355634-161673682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
9	esv2754329	chr1:161355728-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
10	nsv433031	chr1:161355728-161673682	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
11	nsv433042	chr1:161372038-161673682	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv433053	chr1:161389417-161673682	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv433075	chr1:161395555-161673682	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
14	nsv831725	chr1:161403030-161666732	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	esv2757757	chr1:161406313-161624427	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
17	esv1821964	chr1:161410458-161642332	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
18	esv18665	chr1:161411989-161544650	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	esv1812323	chr1:161413114-161624425	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
20	esv1814016	chr1:161413114-161624425	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv427841	chr1:161413114-161624425	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv831736	chr1:161413123-161624424	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
23	esv1824713	chr1:161414555-161642332	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
24	esv1821631	chr1:161414640-161644896	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
25	esv2750812	chr1:161463498-161639559	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
26	esv2752696	chr1:161463498-161639559	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	esv2750813	chr1:161463498-161673682	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	esv2750814	chr1:161463498-161673682	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
29	esv2755678	chr1:161463498-161678377	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	esv2752664	chr1:161463601-161673682	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
31	esv2756399	chr1:161463814-161639559	Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
32	nsv433086	chr1:161465420-161639559	Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
33	esv1799809	chr1:161467963-161650576	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
34	esv1819152	chr1:161473564-161647435	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
35	esv1813267	chr1:161473564-161650576	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
36	esv1815625	chr1:161475983-161650576	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
37	esv1850573	chr1:161475983-161650576	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
38	nsv1007723	chr1:161476489-161638501	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	nsv8502	chr1:161477348-161646550	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
40	nsv1005277	chr1:161478524-161638501	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	esv2763869	chr1:161478536-161638530	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
43	nsv433097	chr1:161478751-161639559	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
44	esv1815003	chr1:161479291-161647435	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
45	esv1808606	chr1:161479291-161649074	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
46	esv1805208	chr1:161479438-161648225	Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
47	nsv526950	chr1:161479745-161495040	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
48	nsv523906	chr1:161479745-161500130	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
49	nsv519779	chr1:161479745-161638386	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
50	nsv464173	chr1:161479745-161646807	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161481800-161493800	Weak transcription	Spleen	Spleen
2	chr1:161483000-161493800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:161483800-161493800	Weak transcription	Placenta	Placenta
4	chr1:161483800-161493800	Weak transcription	Lung	lung
5	chr1:161492800-161494200	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
6	chr1:161493000-161494600	Active TSS	HepG2	liver
7	chr1:161493200-161495200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr1:161493200-161495200	Active TSS	Colon Smooth Muscle	Colon
9	chr1:161493200-161495400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr1:161493400-161493800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:161493400-161494000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:161493400-161494200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr1:161493400-161494200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:161493400-161494800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:161493400-161494800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr1:161493400-161494800	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr1:161493400-161494800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:161493400-161494800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:161493400-161494800	Active TSS	Adipose Nuclei	Adipose
20	chr1:161493400-161494800	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr1:161493400-161494800	Active TSS	Stomach Smooth Muscle	stomach
22	chr1:161493400-161494800	Active TSS	A549	lung
23	chr1:161493400-161495000	Active TSS	Primary T cells from cord blood	blood
24	chr1:161493400-161495000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr1:161493400-161495200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr1:161493400-161495200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr1:161493400-161495200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr1:161493400-161495200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr1:161493400-161495800	Active TSS	Primary B cells from cord blood	blood
30	chr1:161493600-161493800	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr1:161493600-161493800	Active TSS	Primary hematopoietic stem cells	blood
32	chr1:161493600-161493800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr1:161493600-161493800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr1:161493600-161493800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:161493600-161493800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:161493600-161493800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:161493600-161493800	Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr1:161493600-161493800	Active TSS	HMEC	breast
39	chr1:161493600-161493800	Active TSS	K562	blood
40	chr1:161493600-161493800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr1:161493600-161494000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:161493600-161494000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr1:161493600-161494200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
44	chr1:161493600-161494400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:161493600-161494400	Active TSS	NHDF-Ad	bronchial
46	chr1:161493600-161494400	Active TSS	NHEK	skin
47	chr1:161493600-161494600	Active TSS	Dnd41	blood
48	chr1:161493600-161494600	Active TSS	Hela-S3	cervix
49	chr1:161493600-161494800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:161493600-161494800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links