Variant report

Variant rs41297716
Chromosome Location chr1:161495117-161495118
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161493200-161495200 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
2 chr1:161493200-161495200 Active TSS Colon Smooth Muscle Colon
3 chr1:161493200-161495400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
4 chr1:161493400-161495200 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
5 chr1:161493400-161495200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
6 chr1:161493400-161495200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
7 chr1:161493400-161495200 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
8 chr1:161493400-161495800 Active TSS Primary B cells from cord blood blood
9 chr1:161493600-161495200 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr1:161493600-161495200 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:161493600-161495200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:161493600-161495200 Active TSS Primary T helper cells PMA-I stimulated --
13 chr1:161493600-161495200 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:161493600-161495200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:161493600-161495200 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:161493600-161495200 Active TSS Brain Anterior Caudate brain
17 chr1:161493600-161495200 Bivalent/Poised TSS Brain Germinal Matrix brain
18 chr1:161493600-161495200 Active TSS Duodenum Mucosa Duodenum
19 chr1:161493600-161495200 Active TSS Fetal Kidney kidney
20 chr1:161493600-161495200 Active TSS Rectal Mucosa Donor 29 rectum
21 chr1:161493600-161495200 Active TSS Rectal Smooth Muscle rectum
22 chr1:161493600-161495200 Bivalent/Poised TSS Thymus Thymus
23 chr1:161493600-161495200 Active TSS HUVEC blood vessel
24 chr1:161493600-161495400 Active TSS Breast Myoepithelial Primary Cells Breast
25 chr1:161493600-161495400 Active TSS Brain Hippocampus Middle brain
26 chr1:161493600-161495400 Active TSS Duodenum Smooth Muscle Duodenum
27 chr1:161493600-161495400 Bivalent/Poised TSS Fetal Brain Female brain
28 chr1:161493800-161495200 Active TSS Liver Liver
29 chr1:161493800-161495200 Active TSS Brain Angular Gyrus brain
30 chr1:161493800-161495200 Active TSS Pancreatic Islets Pancreatic Islet
31 chr1:161493800-161495200 Active TSS Psoas Muscle Psoas
32 chr1:161493800-161495200 Active TSS Right Atrium heart
33 chr1:161493800-161495200 Active TSS Osteobl bone
34 chr1:161493800-161495400 Active TSS Brain Dorsolateral Prefrontal Cortex brain
35 chr1:161494200-161495200 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
36 chr1:161494200-161495200 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:161494200-161495200 Active TSS NHLF lung
38 chr1:161494400-161495200 Active TSS Primary T helper naive cells fromperipheralblood blood
39 chr1:161494400-161495200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:161494400-161498600 Weak transcription K562 blood
41 chr1:161494400-161499400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:161494600-161498400 Weak transcription Hela-S3 cervix
43 chr1:161494800-161495200 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
44 chr1:161494800-161495200 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:161494800-161495200 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
46 chr1:161494800-161495200 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
47 chr1:161494800-161495200 Flanking Bivalent TSS/Enh iPS DF 19.11 Cell Line embryonic stem cell
48 chr1:161494800-161495200 Flanking Active TSS Primary B cells from peripheral blood blood
49 chr1:161494800-161495200 Flanking Active TSS Primary T cells fromperipheralblood blood
50 chr1:161494800-161495200 Flanking Bivalent TSS/Enh Primary T regulatory cells fromperipheralblood blood

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