Variant report

Variant	rs41298241
Chromosome Location	chr10:116538726-116538727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs45597633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7082625	0.86[EUR][1000 genomes]
rs7090133	0.86[EUR][1000 genomes]
rs7092035	0.86[EUR][1000 genomes]
rs7093476	0.86[EUR][1000 genomes]
rs7097959	0.86[EUR][1000 genomes]
rs74158044	0.86[EUR][1000 genomes]
rs7894021	0.86[EUR][1000 genomes]
rs7895690	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7910860	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116533400-116548600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:116538200-116540000	Enhancers	Hela-S3	cervix
5	chr10:116538200-116540800	Enhancers	Fetal Lung	lung
6	chr10:116538400-116539200	Enhancers	A549	lung
7	chr10:116538400-116540800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:116538400-116540800	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr10:116538400-116541000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:116538400-116541000	Enhancers	HMEC	breast
11	chr10:116538400-116541000	Enhancers	HUVEC	blood vessel
12	chr10:116538400-116541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:116538600-116541000	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links