Variant report

Variant	rs41298279
Chromosome Location	chr3:133465835-133465836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr3:133464753-133465951	HepG2	liver:	n/a	chr3:133464957-133464973 chr3:133465936-133465949
2	SREBP1	chr3:133464736-133465929	HepG2	liver:	n/a	n/a
3	NFIC	chr3:133464671-133465951	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:133464703-133467781	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:133464533-133466088	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:133464701-133466024	HepG2	liver:	n/a	n/a
7	MAX	chr3:133465721-133466106	HepG2	liver:	n/a	n/a
8	POLR2A	chr3:133464731-133467233	HepG2	liver:	n/a	n/a
9	HEY1	chr3:133464668-133467472	HepG2	liver:	n/a	chr3:133465389-133465404
10	MYBL2	chr3:133464479-133466127	HepG2	liver:	n/a	n/a
11	POLR2A	chr3:133464697-133466502	HepG2	liver:	n/a	n/a
12	POLR2A	chr3:133464423-133479250	HepG2	liver:	n/a	n/a
13	MXI1	chr3:133464497-133466063	HepG2	liver:	n/a	n/a
14	CEBPD	chr3:133464897-133465890	HepG2	liver:	n/a	n/a
15	HEY1	chr3:133464270-133467811	HepG2	liver:	n/a	chr3:133465389-133465404
16	POLR2A	chr3:133464411-133467827	HepG2	liver:	n/a	n/a
17	MBD4	chr3:133464603-133466405	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TF	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133464400-133466400	Weak transcription	K562	blood
2	chr3:133464800-133466000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
3	chr3:133464800-133467000	Active TSS	Brain Anterior Caudate	brain
4	chr3:133464800-133467000	Active TSS	Brain Substantia Nigra	brain
5	chr3:133464800-133467000	Bivalent/Poised TSS	HepG2	liver
6	chr3:133464800-133467200	Active TSS	Brain Hippocampus Middle	brain
7	chr3:133464800-133468200	Active TSS	Brain Cingulate Gyrus	brain
8	chr3:133464800-133468400	Active TSS	Brain Angular Gyrus	brain
9	chr3:133465000-133466000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:133465000-133468200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:133465000-133468400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr3:133465400-133466200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr3:133465400-133468400	Weak transcription	Esophagus	oesophagus
14	chr3:133465600-133466000	Active TSS	Liver	Liver
15	chr3:133465600-133466200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:133465600-133466600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:133465600-133483000	Weak transcription	Brain Germinal Matrix	brain
18	chr3:133465800-133466400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:133465800-133469000	Weak transcription	Pancreas	Pancrea
20	chr3:133465800-133470000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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