Variant report

Variant	rs41303097
Chromosome Location	chr1:224346489-224346490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:224312506..224315473-chr1:224345868..224347563,2	K562	blood:
2	chr1:224323938..224326362-chr1:224344749..224346885,2	K562	blood:
3	chr1:224345362..224348351-chr1:224369651..224372388,2	K562	blood:
4	chr1:224344874..224349477-chr1:224369651..224372388,4	K562	blood:
5	chr1:224335933..224338116-chr1:224346191..224348944,2	K562	blood:
6	chr1:224227960..224229471-chr1:224345929..224348019,2	K562	blood:
7	chr1:224339407..224345322-chr1:224346058..224350848,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143753	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11579031	1.00[AFR][1000 genomes]
rs3767732	1.00[AFR][1000 genomes]
rs72755912	1.00[AFR][1000 genomes]
rs72755941	1.00[AFR][1000 genomes]
rs72755955	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757772	chr1:223935220-224363163	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759000	chr1:223935220-224363163	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv427941	chr1:224085052-224363163	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv832692	chr1:224206536-224407717	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv1792939	chr1:224336636-224351023	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
6	nsv945321	chr1:224344064-224347532	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224303000-224363400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:224316600-224352200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:224325000-224351000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:224327600-224356400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:224335800-224349600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:224338400-224349200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr1:224339000-224350000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:224339200-224363200	Weak transcription	Brain Angular Gyrus	brain
9	chr1:224340200-224348400	Strong transcription	Fetal Thymus	thymus
10	chr1:224340800-224347600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:224340800-224348200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:224340800-224349000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:224341000-224349800	Strong transcription	Fetal Intestine Large	intestine
14	chr1:224341600-224349200	Strong transcription	A549	lung
15	chr1:224342600-224348400	Strong transcription	Primary T cells from cord blood	blood
16	chr1:224342800-224348600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:224343000-224346800	Strong transcription	Fetal Muscle Leg	muscle
18	chr1:224343000-224348200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:224343000-224350000	Strong transcription	Liver	Liver
20	chr1:224343000-224350200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:224343000-224350200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:224343000-224350200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:224343200-224346600	Strong transcription	NH-A	brain
24	chr1:224343200-224346800	Strong transcription	NHDF-Ad	bronchial
25	chr1:224343200-224347000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:224343200-224348200	Strong transcription	Hela-S3	cervix
27	chr1:224343200-224348400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:224343200-224348400	Strong transcription	Colon Smooth Muscle	Colon
29	chr1:224343200-224348400	Strong transcription	Fetal Kidney	kidney
30	chr1:224343200-224350000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:224343200-224350000	Strong transcription	Primary B cells from cord blood	blood
32	chr1:224343200-224350000	Strong transcription	HSMM	muscle
33	chr1:224343200-224350200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:224343200-224350200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:224343200-224350200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:224343200-224350600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:224343400-224346600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:224343400-224346600	Strong transcription	Brain Hippocampus Middle	brain
39	chr1:224343400-224346600	Strong transcription	Placenta	Placenta
40	chr1:224343400-224346600	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:224343400-224346800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr1:224343400-224346800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr1:224343400-224346800	Strong transcription	Psoas Muscle	Psoas
44	chr1:224343400-224347200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:224343400-224347400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr1:224343400-224347600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:224343400-224348200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr1:224343400-224348400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:224343400-224348400	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr1:224343400-224348400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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