Variant report

Variant	rs41304755
Chromosome Location	chr9:18829952-18829953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34859655	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858656	0.93[EUR][1000 genomes]
rs7874108	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18818000-18845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:18823000-18834400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:18825400-18833000	Strong transcription	HSMM	muscle
4	chr9:18825400-18833400	Weak transcription	Right Ventricle	heart
5	chr9:18825400-18845200	Weak transcription	HSMMtube	muscle
6	chr9:18825400-18857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:18825600-18830200	Weak transcription	NHLF	lung
8	chr9:18825600-18833600	Strong transcription	NHDF-Ad	bronchial
9	chr9:18825600-18857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:18826000-18832600	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr9:18826200-18833600	Weak transcription	HUVEC	blood vessel
12	chr9:18826600-18830400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:18826800-18830600	Weak transcription	Gastric	stomach
14	chr9:18826800-18834600	Weak transcription	Fetal Heart	heart
15	chr9:18827200-18861600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:18828800-18830000	Genic enhancers	Osteobl	bone
17	chr9:18829000-18832400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:18829600-18830400	Genic enhancers	NH-A	brain
19	chr9:18829600-18832400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:18829800-18830000	Enhancers	Psoas Muscle	Psoas
21	chr9:18829800-18830200	Enhancers	Fetal Muscle Leg	muscle
22	chr9:18829800-18830200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr9:18829800-18830400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:18829800-18830400	Genic enhancers	Fetal Stomach	stomach
25	chr9:18829800-18830800	Strong transcription	Aorta	Aorta

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