Variant report

Variant	rs41305451
Chromosome Location	chr9:102677589-102677590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102667452..102671873-chr9:102673836..102680310,9	K562	blood:
2	chr9:102674290..102678149-chr9:102678845..102681918,3	MCF-7	breast:
3	chr9:102665402..102671136-chr9:102675589..102679261,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ERP44-1	chr9:102677359-102677605	ENSG00000254571.1

Variant related genes	Relation type
ENSG00000136874	Chromatin interaction
ENSG00000255145	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10819718	1.00[ASN][1000 genomes]
rs10988872	1.00[ASN][1000 genomes]
rs10988881	1.00[ASN][1000 genomes]
rs10988907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102669600-102681200	Weak transcription	Spleen	Spleen
2	chr9:102669800-102677800	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:102669800-102677800	Weak transcription	Esophagus	oesophagus
4	chr9:102669800-102677800	Weak transcription	Left Ventricle	heart
5	chr9:102669800-102678000	Weak transcription	Ovary	ovary
6	chr9:102669800-102678200	Weak transcription	Brain Substantia Nigra	brain
7	chr9:102669800-102678200	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:102669800-102679800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:102669800-102680200	Weak transcription	Aorta	Aorta
10	chr9:102669800-102680200	Weak transcription	Gastric	stomach
11	chr9:102669800-102680200	Weak transcription	Lung	lung
12	chr9:102669800-102680200	Weak transcription	Pancreas	Pancrea
13	chr9:102669800-102681200	Weak transcription	Colonic Mucosa	Colon
14	chr9:102669800-102682400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:102669800-102684600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:102669800-102684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:102669800-102686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:102669800-102686200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:102669800-102687600	Weak transcription	Stomach Mucosa	stomach
20	chr9:102669800-102729800	Weak transcription	Small Intestine	intestine
21	chr9:102670000-102677600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:102670000-102677600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:102670000-102677600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr9:102670000-102677600	Weak transcription	NH-A	brain
25	chr9:102670000-102677800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:102670000-102677800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:102670000-102677800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:102670000-102677800	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:102670000-102677800	Weak transcription	Fetal Thymus	thymus
30	chr9:102670000-102677800	Weak transcription	Right Ventricle	heart
31	chr9:102670000-102678000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:102670000-102678200	Weak transcription	HSMM	muscle
33	chr9:102670000-102679800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:102670000-102679800	Weak transcription	Fetal Brain Female	brain
35	chr9:102670000-102680200	Weak transcription	Fetal Brain Male	brain
36	chr9:102670000-102680800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:102670000-102684400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:102670000-102684400	Weak transcription	HSMMtube	muscle
39	chr9:102670000-102686000	Weak transcription	Psoas Muscle	Psoas
40	chr9:102670000-102688200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:102670200-102678000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr9:102670400-102677600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:102670400-102677600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:102670400-102677600	Weak transcription	Fetal Intestine Large	intestine
45	chr9:102670400-102677600	Weak transcription	A549	lung
46	chr9:102670400-102677600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr9:102670400-102677800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:102670400-102677800	Weak transcription	Fetal Kidney	kidney
49	chr9:102670400-102677800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr9:102670400-102677800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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