Variant report

Variant	rs41306023
Chromosome Location	chr13:49772044-49772045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:49771887-49772178	K562	blood:	n/a	n/a

Variant related genes	Relation type
FNDC3A	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4294713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9526528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49687600-49789000	Weak transcription	Stomach Mucosa	stomach
2	chr13:49737800-49788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:49738000-49777000	Weak transcription	Small Intestine	intestine
4	chr13:49738400-49785200	Strong transcription	Liver	Liver
5	chr13:49738600-49785000	Strong transcription	Dnd41	blood
6	chr13:49739000-49774200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:49739600-49786400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:49740200-49786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:49740400-49784800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr13:49740600-49772800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:49740600-49786600	Strong transcription	Placenta	Placenta
12	chr13:49741600-49783400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr13:49742600-49783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr13:49742800-49774400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr13:49745600-49783400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr13:49748800-49790600	Weak transcription	K562	blood
17	chr13:49749400-49774000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr13:49753200-49787600	Weak transcription	Psoas Muscle	Psoas
19	chr13:49756600-49785400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:49756600-49786400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:49756800-49782800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr13:49757200-49774400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr13:49757800-49774600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:49759000-49776200	Weak transcription	Fetal Heart	heart
25	chr13:49759400-49785000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:49759600-49774600	Strong transcription	Adipose Nuclei	Adipose
27	chr13:49759600-49783400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr13:49759800-49783000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:49759800-49783200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr13:49760000-49783400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr13:49760000-49785000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr13:49762800-49789200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:49763000-49788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr13:49763400-49789200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr13:49764000-49782600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr13:49764400-49783400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr13:49765600-49793800	Weak transcription	A549	lung
38	chr13:49766800-49772200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr13:49767600-49772200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr13:49767600-49782200	Weak transcription	Fetal Brain Male	brain
41	chr13:49768000-49772800	Weak transcription	Brain Hippocampus Middle	brain
42	chr13:49768200-49772200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr13:49768200-49773600	Weak transcription	Colon Smooth Muscle	Colon
44	chr13:49768400-49772600	Weak transcription	Gastric	stomach
45	chr13:49768600-49773400	Strong transcription	NH-A	brain
46	chr13:49768600-49786600	Strong transcription	HSMM	muscle
47	chr13:49769000-49781800	Strong transcription	GM12878-XiMat	blood
48	chr13:49769600-49774000	Strong transcription	Fetal Muscle Leg	muscle
49	chr13:49769800-49773800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr13:49769800-49782800	Strong transcription	Fetal Intestine Large	intestine

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