Variant report

Variant	rs41306336
Chromosome Location	chr10:18295865-18295866
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs45447194	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812394	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58377250	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482124	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18294200-18296000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:18294600-18296000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr10:18294800-18297000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:18295200-18296000	Enhancers	Hela-S3	cervix
5	chr10:18295200-18298400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18295200-18299400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:18295400-18298400	Weak transcription	NH-A	brain
8	chr10:18295400-18298400	Weak transcription	Osteobl	bone
9	chr10:18295400-18298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:18295600-18296400	Enhancers	Brain Anterior Caudate	brain
11	chr10:18295600-18296800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:18295600-18298800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:18295600-18298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:18295800-18298600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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