Variant report

Variant	rs41306786
Chromosome Location	chr20:16348291-16348292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13039876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13040354	1.00[AMR][1000 genomes]
rs13040454	1.00[AMR][1000 genomes]
rs13040489	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13041027	0.84[EUR][1000 genomes]
rs13042286	1.00[AMR][1000 genomes]
rs13044167	1.00[AMR][1000 genomes]
rs13045434	0.95[EUR][1000 genomes]
rs13045872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34009116	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34271129	0.80[EUR][1000 genomes]
rs34419300	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34580895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35155900	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35192414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35732002	0.83[AMR][1000 genomes]
rs41276368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56293646	0.95[EUR][1000 genomes]
rs6075050	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66752755	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66839904	1.00[AMR][1000 genomes]
rs67199324	0.80[EUR][1000 genomes]
rs67393936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67813233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73093402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73112319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16295600-16349000	Weak transcription	HepG2	liver
2	chr20:16315400-16364400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr20:16315600-16348400	Weak transcription	Spleen	Spleen
4	chr20:16315800-16357600	Weak transcription	Right Ventricle	heart
5	chr20:16316000-16384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr20:16318600-16348400	Weak transcription	Esophagus	oesophagus
7	chr20:16318800-16368200	Weak transcription	Primary B cells from cord blood	blood
8	chr20:16331400-16348600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:16334000-16377400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr20:16335600-16348600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr20:16338000-16348600	Weak transcription	Stomach Mucosa	stomach
12	chr20:16341200-16371600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr20:16342600-16349200	Weak transcription	NHLF	lung
14	chr20:16342600-16377400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr20:16342800-16349800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr20:16343600-16366800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr20:16343600-16384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr20:16343800-16351800	Weak transcription	HSMM	muscle
19	chr20:16343800-16356800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr20:16344000-16350600	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr20:16344000-16352400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr20:16344400-16380200	Weak transcription	HSMMtube	muscle
23	chr20:16344600-16348600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr20:16344800-16359400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr20:16344800-16360800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr20:16344800-16371400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr20:16344800-16377400	Weak transcription	Brain Angular Gyrus	brain
28	chr20:16345000-16348800	Weak transcription	A549	lung
29	chr20:16345000-16349800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr20:16345000-16351200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr20:16345000-16351200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr20:16345000-16391200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr20:16345200-16349800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr20:16345200-16350600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr20:16345200-16359400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr20:16345400-16349000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr20:16345400-16353200	Strong transcription	Adipose Nuclei	Adipose
38	chr20:16345400-16377400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr20:16345400-16391000	Weak transcription	Brain Germinal Matrix	brain
40	chr20:16345800-16351000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr20:16346000-16349200	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr20:16346000-16351200	Strong transcription	Liver	Liver
43	chr20:16346200-16348600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr20:16346200-16349000	Strong transcription	Gastric	stomach
45	chr20:16346200-16349200	Strong transcription	Pancreas	Pancrea
46	chr20:16346200-16349200	Weak transcription	Osteobl	bone
47	chr20:16346200-16350600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr20:16346200-16350600	Strong transcription	Lung	lung
49	chr20:16346200-16350800	Strong transcription	NHEK	skin
50	chr20:16346200-16351000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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