Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23137402..23139607-chr3:23140156..23142703,3	MCF-7	breast:
2	chr3:23126490..23128594-chr3:23135045..23137926,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4456880	0.93[ASN][1000 genomes]
rs4558781	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858057	0.97[ASN][1000 genomes]
rs6550720	0.94[ASN][1000 genomes]
rs6770871	0.85[EUR][1000 genomes]
rs6770966	0.84[EUR][1000 genomes]
rs6773004	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6773198	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778603	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6800955	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310710	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006921	chr3:23121967-23155165	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1010493	chr3:23124392-23155165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23136400-23137600	Enhancers	HUVEC	blood vessel
2	chr3:23136600-23137600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:23136600-23137800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:23136600-23137800	Enhancers	Hela-S3	cervix
5	chr3:23136600-23138000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:23136600-23138000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:23137000-23138000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:23137200-23137800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:23137200-23137800	Flanking Active TSS	A549	lung
10	chr3:23137200-23138000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:23137200-23138000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:23137200-23138000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:23137200-23138000	Enhancers	HSMMtube	muscle
14	chr3:23137400-23137600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:23137400-23137600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:23137400-23137800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:23137400-23137800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:23137400-23137800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:23137400-23137800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:23137400-23138000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:23137400-23138400	Enhancers	Placenta	Placenta

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