Variant report

Variant	rs41309645
Chromosome Location	chr22:30883002-30883003
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs41307237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41310254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56037418	0.99[AFR][1000 genomes]
rs56083844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57372685	0.98[AFR][1000 genomes]
rs60047896	0.96[AFR][1000 genomes]
rs73392157	0.96[EUR][1000 genomes]
rs73392164	0.99[AFR][1000 genomes]
rs73392169	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73392179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30874600-30894000	Weak transcription	Right Atrium	heart
2	chr22:30880600-30883400	Enhancers	Pancreas	Pancrea
3	chr22:30880800-30885600	Enhancers	Liver	Liver
4	chr22:30881400-30883400	Enhancers	Duodenum Mucosa	Duodenum
5	chr22:30881800-30890000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr22:30882000-30888400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr22:30882000-30889400	Weak transcription	Spleen	Spleen
8	chr22:30882200-30884200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:30882800-30883400	Enhancers	Gastric	stomach
10	chr22:30883000-30883400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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