Variant report

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10104234	0.91[ASN][1000 genomes]
rs12549776	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28581972	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs28660971	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237031	0.92[ASN][1000 genomes]
rs4737540	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989377	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60195000-60196600	Enhancers	Rectal Smooth Muscle	rectum
2	chr8:60195200-60196600	Enhancers	Adipose Nuclei	Adipose
3	chr8:60195200-60197600	Enhancers	Fetal Stomach	stomach
4	chr8:60195600-60197000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:60195600-60197200	Weak transcription	GM12878-XiMat	blood
6	chr8:60195800-60197000	Enhancers	Colon Smooth Muscle	Colon
7	chr8:60195800-60197200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:60195800-60197200	Enhancers	Fetal Brain Female	brain
9	chr8:60196000-60196600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:60196000-60196600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:60196000-60197800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:60196200-60196600	Flanking Active TSS	Fetal Heart	heart
13	chr8:60196200-60196600	Flanking Active TSS	Fetal Lung	lung
14	chr8:60196200-60197400	Enhancers	NHEK	skin
15	chr8:60196200-60197800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:60196200-60197800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:60196200-60197800	Enhancers	HMEC	breast
18	chr8:60196200-60213000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:60196400-60196600	Enhancers	Stomach Smooth Muscle	stomach
20	chr8:60196400-60196800	Flanking Active TSS	Fetal Brain Male	brain
21	chr8:60196400-60198000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:60196400-60198400	Enhancers	Dnd41	blood

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