Variant report

Variant	rs4131826
Chromosome Location	chr1:161282384-161282385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161170756..161173506-chr1:161282085..161284207,2	MCF-7	breast:
2	chr1:161177155..161181241-chr1:161281992..161286131,5	K562	blood:
3	chr1:161166924..161169630-chr1:161281750..161283558,2	MCF-7	breast:
4	chr1:161137931..161140889-chr1:161281311..161284069,2	K562	blood:
5	chr1:161278785..161280602-chr1:161282077..161284441,2	MCF-7	breast:
6	chr1:161281081..161283792-chr1:161284991..161286522,2	MCF-7	breast:
7	chr1:161281353..161283916-chr1:161334777..161336418,2	K562	blood:
8	chr1:161194292..161205045-chr1:161279588..161288493,17	K562	blood:
9	chr1:161229659..161232274-chr1:161282261..161284000,2	K562	blood:
10	chr1:161176759..161178669-chr1:161280543..161282572,2	K562	blood:
11	chr1:161191256..161193783-chr1:161281655..161284632,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000158887	Chromatin interaction
ENSG00000158859	Chromatin interaction
ENSG00000158864	Chromatin interaction
ENSG00000158882	Chromatin interaction
ENSG00000158874	Chromatin interaction
ENSG00000143224	Chromatin interaction
ENSG00000263548	Chromatin interaction
ENSG00000143257	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17398230	1.00[YRI][hapmap]
rs61802089	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4131826	B4GALT3	cis	cerebellum	SCAN
rs4131826	NES	cis	parietal	SCAN

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161276000-161283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:161276200-161283200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:161276200-161283600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:161276400-161283400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:161276400-161283400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:161276400-161283400	Weak transcription	Liver	Liver
7	chr1:161276400-161283600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:161276600-161282800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:161276600-161283400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:161276600-161283400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:161276600-161283400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:161276600-161283400	Weak transcription	Right Atrium	heart
13	chr1:161276600-161283600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:161276800-161283400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr1:161276800-161283400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:161276800-161283400	Weak transcription	Brain Anterior Caudate	brain
17	chr1:161277000-161283600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:161277200-161283000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:161277200-161283400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr1:161277200-161283400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:161277200-161283400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr1:161277200-161283400	Weak transcription	Esophagus	oesophagus
23	chr1:161277200-161283400	Weak transcription	Pancreas	Pancrea
24	chr1:161277200-161283400	Weak transcription	Spleen	Spleen
25	chr1:161277200-161283600	Weak transcription	Left Ventricle	heart
26	chr1:161277400-161282400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:161277400-161283200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:161277400-161283200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr1:161277400-161283400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:161277400-161283400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr1:161277400-161283400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr1:161278200-161283200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:161278200-161283200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr1:161278200-161283400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:161278200-161283400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:161278400-161283000	Weak transcription	Dnd41	blood
37	chr1:161278400-161283200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr1:161278400-161283200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr1:161278400-161283400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:161278400-161283400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:161278400-161283400	Weak transcription	HMEC	breast
42	chr1:161278600-161283400	Weak transcription	Hela-S3	cervix
43	chr1:161278800-161283400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:161278800-161283400	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:161278800-161283400	Weak transcription	HSMMtube	muscle
46	chr1:161279000-161283000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:161279000-161283200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr1:161279200-161283200	Enhancers	HepG2	liver
49	chr1:161279800-161283200	Enhancers	K562	blood
50	chr1:161279800-161283400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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