Variant report

Variant	rs4132098
Chromosome Location	chr7:50459320-50459321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50457576..50459745-chr7:50466831..50469268,2	K562	blood:
2	chr7:50458483..50461441-chr7:50461737..50464735,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3177656	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55747400	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55875212	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56278999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50420000-50461800	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr7:50430600-50459800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr7:50431200-50460600	Strong transcription	Dnd41	blood
4	chr7:50431400-50472600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:50437200-50460200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:50439400-50460600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr7:50440800-50461400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:50441200-50459800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:50441200-50460200	Strong transcription	Thymus	Thymus
10	chr7:50441200-50460400	Strong transcription	Primary hematopoietic stem cells	blood
11	chr7:50441200-50460400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:50442200-50460200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:50445400-50461400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:50446600-50461400	Weak transcription	Colonic Mucosa	Colon
15	chr7:50447200-50467400	Weak transcription	Esophagus	oesophagus
16	chr7:50447200-50467400	Weak transcription	Gastric	stomach
17	chr7:50449200-50467400	Weak transcription	Liver	Liver
18	chr7:50450400-50460000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:50451400-50462600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:50453200-50467800	Weak transcription	Pancreas	Pancrea
21	chr7:50453600-50460000	Weak transcription	GM12878-XiMat	blood
22	chr7:50454400-50461000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr7:50454600-50460000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:50454600-50460800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:50454600-50461000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
26	chr7:50454600-50462400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr7:50454800-50460000	Genic enhancers	Primary T cells from cord blood	blood
28	chr7:50455000-50460000	Strong transcription	K562	blood
29	chr7:50455200-50460000	Weak transcription	Lung	lung
30	chr7:50455400-50459800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:50455400-50460200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:50455400-50463400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:50455600-50461200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr7:50456200-50461200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr7:50456600-50462200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr7:50456800-50461200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:50457400-50461400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:50457400-50461400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:50458400-50459400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:50459000-50460800	Strong transcription	Spleen	Spleen
41	chr7:50459000-50462600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:50459200-50460800	Genic enhancers	Primary B cells from cord blood	blood
43	chr7:50459200-50461200	Genic enhancers	Primary B cells from peripheral blood	blood
44	chr7:50459200-50462400	Genic enhancers	Fetal Thymus	thymus

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