Variant report

Variant	rs413270
Chromosome Location	chr15:93150016-93150017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs385333	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs405949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs450455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60832184	0.83[AMR][1000 genomes]
rs74029104	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
6	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
3	chr15:93142200-93156400	Weak transcription	Lung	lung
4	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
5	chr15:93142400-93152400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
7	chr15:93145400-93151200	Weak transcription	Gastric	stomach
8	chr15:93146800-93160000	Weak transcription	Psoas Muscle	Psoas
9	chr15:93147000-93152400	Weak transcription	Esophagus	oesophagus
10	chr15:93147400-93150800	Weak transcription	HSMMtube	muscle
11	chr15:93149400-93150200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:93149600-93151600	Enhancers	HSMM	muscle
13	chr15:93150000-93150200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:93150000-93153200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:93150000-93153200	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:93150000-93153600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:93150000-93155600	Weak transcription	Pancreas	Pancrea
18	chr15:93150000-93160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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